RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 MYO7AQ13402 2215 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 OR10H3O60404 316 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 TUFMP49411 452 aaKnown RBP12.55□□□□□ -0.4
VPS13A-204ENST00000376634 SAMD7Q7Z3H4 446 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 FAM98AQ8NCA5 519 aaKnown RBP12.55□□□□□ -0.4
VPS13A-204ENST00000376634 SAMHD1Q9Y3Z3 626 aaKnown RBP12.55□□□□□ -0.4
VPS13A-204ENST00000376634 LDOC1O95751 146 aaPredicted RBP12.55□□□□□ -0.4
VPS13A-204ENST00000376634 USP49Q70CQ1 688 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 ZNF571Q7Z3V5 609 aaPredicted RBP12.55□□□□□ -0.4
VPS13A-204ENST00000376634 TRPV1Q8NER1 839 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 ZHX1-C8orf76Q96EF9 292 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 GPER1Q99527 375 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.55□□□□□ -0.4
VPS13A-204ENST00000376634 AXLP30530 894 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 SWI5Q1ZZU3 235 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 METTL7BQ6UX53 244 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 EFCAB3Q8N7B9 438 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 KLHL32Q96NJ5 620 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 ASAH2Q9NR71 780 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 GPR75-ASB3A0A0A6YYF3 556 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 XKRYO14609 159 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 NTRK1P04629 796 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 LTA4HP09960 611 aaKnown RBP12.55□□□□□ -0.4
VPS13A-204ENST00000376634 CEBPGP53567 150 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 SLC15A2Q16348 729 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 MAPKAPK3Q16644 382 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 RUNDC3AQ59EK9 446 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 AFTPHQ6ULP2 937 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 B3GALT6Q96L58 329 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 CCDC115Q96NT0 180 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 IFNA6P05013 189 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 MAGEA2P43356 314 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 USP46P62068 366 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 ST3GAL1Q11201 340 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 RABL6Q3YEC7 729 aaPredicted RBP12.55□□□□□ -0.4
VPS13A-204ENST00000376634 KCNT2Q6UVM3 1135 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 JAZF1Q86VZ6 243 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 EFR3BQ9Y2G0 817 aa12.55□□□□□ -0.4
VPS13A-204ENST00000376634 SMCO3A2RU48 225 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 MOXD2PA6NHM9 499 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 TOP3BO95985 862 aaKnown RBP12.54□□□□□ -0.4
VPS13A-204ENST00000376634 IDO1P14902 403 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 SLC4A11Q8NBS3 891 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 MMP14P50281 582 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 GALNT3Q14435 633 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 POM121L1PQ3SYA9 428 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 ERICH5Q6P6B1 374 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 METTL3Q86U44 580 aaKnown RBP12.54□□□□□ -0.4
VPS13A-204ENST00000376634 SLC12A4Q9UP95 1085 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 GIT1Q9Y2X7 761 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 PAPD7Q5XG87 772 aaKnown RBP12.54□□□□□ -0.4
VPS13A-204ENST00000376634 ZNF540Q8NDQ6 660 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 TKTL2Q9H0I9 626 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 WRBO00258 174 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 FFAR3O14843 346 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 GPR42O15529 346 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 CCNDBP1O95273 360 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 HSPA14Q0VDF9 509 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 PRR23CQ6ZRP0 262 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 TMEM86AQ8N2M4 240 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 NKAPQ8N5F7 415 aaKnown RBP12.54□□□□□ -0.4
VPS13A-204ENST00000376634 MSRAQ9UJ68 235 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 L1RE1Q9UN81 338 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 SLC27A6Q9Y2P4 619 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 AKAP3O75969 853 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 RSL1D1O76021 490 aaKnown RBP12.54□□□□□ -0.4
VPS13A-204ENST00000376634 FDPSP14324 419 aaKnown RBP12.54□□□□□ -0.4
VPS13A-204ENST00000376634 GRB10Q13322 594 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 SETD4Q9NVD3 440 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 CD163L1Q9NR16 1453 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 KCNQ2O43526 872 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 MAPTP10636 758 aaKnown RBP12.54□□□□□ -0.4
VPS13A-204ENST00000376634 CYP4B1P13584 511 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 STK32AQ8WU08 396 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 DNAJB3Q8WWF6 145 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 GPN1Q9HCN4 374 aaPredicted RBP12.54□□□□□ -0.4
VPS13A-204ENST00000376634 ABCC13Q9NSE7 274 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 LEF1Q9UJU2 399 aaPredicted RBP12.54□□□□□ -0.4
VPS13A-204ENST00000376634 KCNK1O00180 336 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 GHRP10912 638 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 CAP2P40123 477 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 SLC6A3Q01959 620 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 MFSD10Q14728 455 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 TTC7BQ86TV6 843 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 SLC41A1Q8IVJ1 513 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 PIGKQ92643 395 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 PCDHGB3Q9Y5G1 929 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 GAKO14976 1311 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 PCP4L1A6NKN8 68 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 SLC28A2O43868 658 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 ULK1O75385 1050 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 GLI1P08151 1106 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 RPL19P84098 196 aaKnown RBP12.54□□□□□ -0.4
VPS13A-204ENST00000376634 ZNF268Q14587 947 aaPredicted RBP12.54□□□□□ -0.4
VPS13A-204ENST00000376634 ZMYND11Q15326 602 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 PIK3C3Q8NEB9 887 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 PPP3R2Q96LZ3 170 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 FDXACB1Q9BRP7 624 aaPredicted RBP12.54□□□□□ -0.4
VPS13A-204ENST00000376634 CHCHD6Q9BRQ6 235 aa12.54□□□□□ -0.4
VPS13A-204ENST00000376634 SPATA9Q9BWV2 254 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms