RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 PPEF2O14830 753 aa6.59□□□□□ -1.36
SMC1A-202ENST00000375340 ATG7O95352 703 aa6.59□□□□□ -1.36
SMC1A-202ENST00000375340 ALOX12P18054 663 aa6.59□□□□□ -1.36
SMC1A-202ENST00000375340 SOX6P35712 828 aa6.59□□□□□ -1.36
SMC1A-202ENST00000375340 PRIM2P49643 509 aa6.59□□□□□ -1.36
SMC1A-202ENST00000375340 NRG1Q02297 640 aaPredicted RBP6.59□□□□□ -1.36
SMC1A-202ENST00000375340 ADGRE1Q14246 886 aa6.59□□□□□ -1.36
SMC1A-202ENST00000375340 RAB6CQ53S08 254 aa6.59□□□□□ -1.36
SMC1A-202ENST00000375340 GPR158Q5T848 1215 aa6.59□□□□□ -1.36
SMC1A-202ENST00000375340 GTF3C2Q8WUA4 911 aaPredicted RBP6.59□□□□□ -1.36
SMC1A-202ENST00000375340 CASP10Q92851 521 aa6.59□□□□□ -1.36
SMC1A-202ENST00000375340 VPS33AQ96AX1 596 aa6.59□□□□□ -1.36
SMC1A-202ENST00000375340 PTCD3Q96EY7 689 aaKnown RBP6.59□□□□□ -1.36
SMC1A-202ENST00000375340 FOPNLQ96NB1 174 aa6.59□□□□□ -1.36
SMC1A-202ENST00000375340 PRKD2Q9BZL6 878 aa6.59□□□□□ -1.36
SMC1A-202ENST00000375340 RAB6CQ9H0N0 254 aa6.59□□□□□ -1.36
SMC1A-202ENST00000375340 RPL26L1Q9UNX3 145 aaKnown RBP6.59□□□□□ -1.36
SMC1A-202ENST00000375340 VPS9D1Q9Y2B5 631 aa6.59□□□□□ -1.36
SMC1A-202ENST00000375340 SLC27A5Q9Y2P5 690 aa6.59□□□□□ -1.36
SMC1A-202ENST00000375340 SLC15A5A6NIM6 579 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 L1CAMP32004 1257 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 SFT2D3Q587I9 215 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 UNC93AQ86WB7 457 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 NT5DC4Q86YG4 428 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 PHTF2Q8N3S3 785 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 HERPUD2Q9BSE4 406 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 SMPD4Q9NXE4 827 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 TNRC6CQ9HCJ0 1690 aaKnown RBP6.58□□□□□ -1.36
SMC1A-202ENST00000375340 CD3EAPO15446 510 aaKnown RBP6.58□□□□□ -1.36
SMC1A-202ENST00000375340 CTPS1P17812 591 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 CDH13P55290 713 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 HECTD2Q5U5R9 776 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 NIPA2Q8N8Q9 360 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 CDYL2Q8N8U2 506 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 ZBED2Q9BTP6 218 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 ADGRE3Q9BY15 652 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 VTA1Q9NP79 307 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 POLG2Q9UHN1 485 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 PRPF19Q9UMS4 504 aaKnown RBP6.58□□□□□ -1.36
SMC1A-202ENST00000375340 MYOCOSA0A1B0GUC4 107 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 RPL38P63173 70 aaKnown RBP6.58□□□□□ -1.36
SMC1A-202ENST00000375340 LIN52Q52LA3 116 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 ZNF618Q5T7W0 954 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 CFAP52Q8N1V2 620 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 DCBLD1Q8N8Z6 715 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 METTL6Q8TCB7 284 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 HDAC10Q969S8 669 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 TEX12Q9BXU0 123 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 SYTL2Q9HCH5 934 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 MDM4O15151 490 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 NRP2O60462 931 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 LBPP18428 481 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 NR4A1P22736 598 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 ATP6V1E1P36543 226 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 AP5B1Q2VPB7 878 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 ARL13AQ5H913 290 aaPredicted RBP6.58□□□□□ -1.36
SMC1A-202ENST00000375340 NOMO2Q5JPE7 1267 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 SLC26A9Q7LBE3 791 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 SKA1Q96BD8 255 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 ELOVL6Q9H5J4 265 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 DUSP12Q9UNI6 340 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 LOC100506127A0A0U1RQW1 187 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 PSMD11O00231 422 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 SORBS2O94875 1100 aaKnown RBP6.58□□□□□ -1.36
SMC1A-202ENST00000375340 FADS2O95864 444 aaKnown RBP6.58□□□□□ -1.36
SMC1A-202ENST00000375340 MT-CYBP00156 380 aaPredicted RBP6.58□□□□□ -1.36
SMC1A-202ENST00000375340 EPHX2P34913 555 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 SLC1A2P43004 574 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 PIK3CGP48736 1102 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 DLG1Q12959 904 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 BOP1Q14137 746 aaKnown RBP6.58□□□□□ -1.36
SMC1A-202ENST00000375340 FAM171A1Q5VUB5 890 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 FAM35AQ86V20 835 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 SPATA16Q9BXB7 569 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 FANCEQ9HB96 536 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 TAS2R13Q9NYV9 303 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 LSM7Q9UK45 103 aaKnown RBP6.58□□□□□ -1.36
SMC1A-202ENST00000375340 POMPQ9Y244 141 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 LAMB2P55268 1798 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 NRAPQ86VF7 1730 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 ADAMTSL1Q8N6G6 1762 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 KLRG2A4D1S0 409 aaPredicted RBP6.58□□□□□ -1.36
SMC1A-202ENST00000375340 TTLL13PA6NNM8 815 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 ABLIM1O14639 778 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 PLIN3O60664 434 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 MMP3P08254 477 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 RENBPP51606 427 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 MSLNQ13421 630 aaPredicted RBP6.58□□□□□ -1.36
SMC1A-202ENST00000375340 FKBP1CQ5VVH2 108 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 NCBP2-AS2Q69YL0 99 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 FAM45BPQ6NSW5 357 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 CAMK1DQ8IU85 385 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 FAM45AQ8TCE6 357 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 HEXDCQ8WVB3 486 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 PCDHAC1Q9H158 963 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 ATP13A1Q9HD20 1204 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 SLC7A8Q9UHI5 535 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 PPP2R3BQ9Y5P8 575 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 SOWAHBA6NEL2 793 aa6.58□□□□□ -1.36
SMC1A-202ENST00000375340 FGF10O15520 208 aaPredicted RBP6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms