RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 PITPNM1O00562 1244 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 CDC25CP30307 473 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 CD97P48960 835 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 MED22Q15528 200 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 GPAT2Q6NUI2 795 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 SPESP1Q6UW49 350 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 VPS35Q96QK1 796 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 ZNF334Q9HCZ1 680 aaPredicted RBP12.67□□□□□ -0.38
COL6A3-203ENST00000353578 NR2E1Q9Y466 385 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 PCDHGB1Q9Y5G3 927 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 A0A1B0GVC2 190 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 SCELO95171 688 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 ERBB2P04626 1255 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 CYP11B2P19099 503 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 RABL3Q5HYI8 236 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 NKAPQ8N5F7 415 aaKnown RBP12.67□□□□□ -0.38
COL6A3-203ENST00000353578 DNAJB14Q8TBM8 379 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 ACTR8Q9H981 624 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 TBC1D14Q9P2M4 693 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 CRLS1Q9UJA2 301 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 ZFYVE16Q7Z3T8 1539 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 MYMKA6NI61 221 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 DNM1LO00429 736 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 ADAMTS2O95450 1211 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 CHRM3P20309 590 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 CD72P21854 359 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 SYT16Q17RD7 645 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 USP17L2Q6R6M4 530 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 TMEM47Q9BQJ4 181 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 FARSAQ9Y285 508 aaKnown RBP12.67□□□□□ -0.38
COL6A3-203ENST00000353578 PLLPQ9Y342 182 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 PAPSS1O43252 624 aaPredicted RBP12.67□□□□□ -0.38
COL6A3-203ENST00000353578 SLC2A2P11168 524 aaPredicted RBP12.67□□□□□ -0.38
COL6A3-203ENST00000353578 ANXA3P12429 323 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 CYP2A7P20853 494 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 IGFBP5P24593 272 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 MCAMP43121 646 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 SV2CQ496J9 727 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 CENPSQ8N2Z9 138 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 BAP1Q92560 729 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 MTMR8Q96EF0 704 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 EHD4Q9H223 541 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 IL1RAPQ9NPH3 570 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 AFF4Q9UHB7 1163 aaKnown RBP12.67□□□□□ -0.38
COL6A3-203ENST00000353578 DOLKQ9UPQ8 538 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 DYRK1BQ9Y463 629 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 RPTORQ8N122 1335 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 ZSCAN5CA6NGD5 496 aaPredicted RBP12.67□□□□□ -0.38
COL6A3-203ENST00000353578 GPC1P35052 558 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 ZSCAN5AQ9BUG6 496 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 AP5M1Q9H0R1 490 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 NXF3Q9H4D5 531 aaKnown RBP12.67□□□□□ -0.38
COL6A3-203ENST00000353578 RERGLQ9H628 205 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 ZSCAN5BA6NJL1 495 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 FGD3Q5JSP0 725 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 WDR59Q6PJI9 974 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 CCDC71Q8IV32 467 aaPredicted RBP12.67□□□□□ -0.38
COL6A3-203ENST00000353578 AURKBQ96GD4 344 aaPredicted RBP12.67□□□□□ -0.38
COL6A3-203ENST00000353578 GPR63Q9BZJ6 419 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 CYP4F12Q9HCS2 524 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 SNX6Q9UNH7 406 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 CBY1Q9Y3M2 126 aa12.67□□□□□ -0.38
COL6A3-203ENST00000353578 ZNF609O15014 1411 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 BST1Q10588 318 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 FADDQ13158 208 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 FASTKD5Q7L8L6 764 aaKnown RBP12.66□□□□□ -0.38
COL6A3-203ENST00000353578 REXO5Q96IC2 774 aaKnown RBP12.66□□□□□ -0.38
COL6A3-203ENST00000353578 C14orf105Q9NVL8 296 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 KCNH4Q9UQ05 1017 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 AQP12BA6NM10 295 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 FOXN1O15353 648 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 TRIM3O75382 744 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-203ENST00000353578 NUDT7P0C024 238 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 CAMK2GQ13555 558 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-203ENST00000353578 AQP12AQ8IXF9 295 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 OR52K2Q8NGK3 314 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 ASB9Q96DX5 294 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 SEPT5Q99719 369 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-203ENST00000353578 NEO1Q92859 1461 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 PSKH1P11801 424 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 MATKP42679 507 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 BCAT1P54687 386 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 AQP4P55087 323 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 ANXA8L1Q5VT79 327 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 SLC25A25Q6KCM7 469 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 SMG8Q8ND04 991 aaKnown RBP12.66□□□□□ -0.38
COL6A3-203ENST00000353578 FLAD1Q8NFF5 587 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 OR14K1Q8NGZ2 314 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 ZFP28Q8NHY6 868 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 ZNF347Q96SE7 839 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 MTRRQ9UBK8 725 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 EIF3KQ9UBQ5 218 aaKnown RBP12.66□□□□□ -0.38
COL6A3-203ENST00000353578 PCDHGC3Q9UN70 934 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 SSX5O60225 188 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 RLN2P04090 185 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 HALP42357 657 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 FSTL5Q8N475 847 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-203ENST00000353578 COA7Q96BR5 231 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 SLC25A3Q00325 362 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 TRPM4Q8TD43 1214 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms