RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 IFNA2P01563 188 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 IMPDH2P12268 514 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 PIK3R1P27986 724 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 TMED10P49755 219 aaKnown RBP8.47□□□□□ -1.05
HMGB1-203ENST00000341423 FXR2P51116 673 aaKnown RBP eCLIP8.47□□□□□ -1.05
HMGB1-203ENST00000341423 ILF2Q12905 390 aaKnown RBP8.47□□□□□ -1.05
HMGB1-203ENST00000341423 RRP1BQ14684 758 aaKnown RBP8.47□□□□□ -1.05
HMGB1-203ENST00000341423 KIAA1161Q6NSJ0 714 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 MSANTD2Q6P1R3 559 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 Q6ZSR6 202 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 SLC29A4Q7RTT9 530 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 AMZ2Q86W34 360 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 RASSF3Q86WH2 238 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 CBWD2Q8IUF1 395 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 TMEM178AQ8NBL3 297 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 FBXO15Q8NCQ5 510 aaPredicted RBP8.47□□□□□ -1.05
HMGB1-203ENST00000341423 ZFP28Q8NHY6 868 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 CELF6Q96J87 481 aaKnown RBP8.47□□□□□ -1.05
HMGB1-203ENST00000341423 AIFM3Q96NN9 605 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 USP28Q96RU2 1077 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 ACTR8Q9H981 624 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 ATP13A2Q9NQ11 1180 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 CHCHD3Q9NX63 227 aaKnown RBP8.47□□□□□ -1.05
HMGB1-203ENST00000341423 NDRG3Q9UGV2 375 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 NPHP3-ACAD11A0A0J9YXS1 232 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 MAPK1P28482 360 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 IL12BP29460 328 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 PLP2Q04941 152 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 CYP4F3Q08477 520 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 UBXN11Q5T124 520 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 SLC9A9Q8IVB4 645 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 PEX5LQ8IYB4 626 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 SLC5A8Q8N695 610 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 MYRIPQ8NFW9 859 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 CSPG4P5Q96PW8 444 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 LPIN3Q9BQK8 851 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 ANLNQ9NQW6 1124 aa8.47□□□□□ -1.05
HMGB1-203ENST00000341423 TRMT1Q9NXH9 659 aaKnown RBP8.47□□□□□ -1.05
HMGB1-203ENST00000341423 CDC42BPBQ9Y5S2 1711 aa8.46□□□□□ -1.05
HMGB1-203ENST00000341423 KIF13AQ9H1H9 1805 aa8.46□□□□□ -1.05
HMGB1-203ENST00000341423 ERICH4A6NGS2 130 aa8.46□□□□□ -1.05
HMGB1-203ENST00000341423 WNT9AO14904 365 aa8.46□□□□□ -1.05
HMGB1-203ENST00000341423 CYP1A1P04798 512 aaPredicted RBP8.46□□□□□ -1.05
HMGB1-203ENST00000341423 PAEPP09466 180 aa8.46□□□□□ -1.05
HMGB1-203ENST00000341423 ZNF132P52740 706 aa8.46□□□□□ -1.05
HMGB1-203ENST00000341423 CASP9P55211 416 aa8.46□□□□□ -1.05
HMGB1-203ENST00000341423 GRIN1Q05586 938 aa8.46□□□□□ -1.05
HMGB1-203ENST00000341423 TBX2Q13207 712 aaPredicted RBP8.46□□□□□ -1.05
HMGB1-203ENST00000341423 ELAVL3Q14576 367 aaKnown RBP8.46□□□□□ -1.05
HMGB1-203ENST00000341423 PRAMEF14Q5SWL7 426 aa8.46□□□□□ -1.05
HMGB1-203ENST00000341423 NIPAL1Q6NVV3 410 aa8.46□□□□□ -1.05
HMGB1-203ENST00000341423 ALKBH5Q6P6C2 394 aaKnown RBP8.46□□□□□ -1.05
HMGB1-203ENST00000341423 DET1Q7L5Y6 550 aa8.46□□□□□ -1.05
HMGB1-203ENST00000341423 PPP1R3BQ86XI6 285 aa8.46□□□□□ -1.05
HMGB1-203ENST00000341423 LMNTD2Q8IXW0 634 aa8.46□□□□□ -1.05
HMGB1-203ENST00000341423 SDR16C5Q8N3Y7 309 aa8.46□□□□□ -1.05
HMGB1-203ENST00000341423 PCDH20Q8N6Y1 951 aaKnown RBP8.46□□□□□ -1.05
HMGB1-203ENST00000341423 ZNF564Q8TBZ8 553 aaPredicted RBP8.46□□□□□ -1.05
HMGB1-203ENST00000341423 PRICKLE1Q96MT3 831 aaPredicted RBP8.46□□□□□ -1.05
HMGB1-203ENST00000341423 PTGES2Q9H7Z7 377 aa8.46□□□□□ -1.05
HMGB1-203ENST00000341423 EFCAB8A8MWE9 144 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 NOL3O60936 208 aaKnown RBP8.46□□□□□ -1.06
HMGB1-203ENST00000341423 AP1S1P61966 158 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 CST6Q15828 149 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.46□□□□□ -1.06
HMGB1-203ENST00000341423 LOXL4Q96JB6 756 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 TGM7Q96PF1 710 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 ADI1Q9BV57 179 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 ATG10Q9H0Y0 220 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 TNKS2Q9H2K2 1166 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 ELOVL6Q9H5J4 265 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 SERINC1Q9NRX5 453 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 SHOC2Q9UQ13 582 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 B4GALT5O43286 388 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 LYPD8Q6UX82 237 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 ERN2Q76MJ5 926 aaKnown RBP8.46□□□□□ -1.06
HMGB1-203ENST00000341423 SNX32Q86XE0 403 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 DDIASQ8IXT1 998 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 ADCY4Q8NFM4 1077 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 EPS8L1Q8TE68 723 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 PHF21AQ96BD5 680 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 TEKT5Q96M29 485 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 OR2M4Q96R27 311 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 EIF2AQ9BY44 585 aaKnown RBP8.46□□□□□ -1.06
HMGB1-203ENST00000341423 SMG9Q9H0W8 520 aaKnown RBP8.46□□□□□ -1.06
HMGB1-203ENST00000341423 TIGARQ9NQ88 270 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 TAS2R14Q9NYV8 317 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 FNIP2Q9P278 1114 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 DKKL1Q9UK85 242 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 A0A1W2PQD8 194 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 RACK1P63244 317 aaKnown RBP8.46□□□□□ -1.06
HMGB1-203ENST00000341423 DSG1Q02413 1049 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 ATXN7L2Q5T6C5 722 aaPredicted RBP8.46□□□□□ -1.06
HMGB1-203ENST00000341423 EEF1DP3Q658K8 133 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 C4orf22Q6V702 233 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 GDF15Q99988 308 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 ROGDIQ9GZN7 287 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 POMKQ9H5K3 350 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 ERVK-5Q9HDB9 667 aa8.46□□□□□ -1.06
HMGB1-203ENST00000341423 DYNLRB1Q9NP97 96 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms