RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 GRPEL2Q8TAA5 225 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 ZFAND2BQ8WV99 257 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 DCUN1D5Q9BTE7 237 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 CYP3A5P20815 502 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 ARMC6Q6NXE6 501 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 MAGEE2Q8TD90 523 aaPredicted RBP10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 ACOX2Q99424 681 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 NUSAP1Q9BXS6 441 aaKnown RBP10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 DDTLA6NHG4 134 aaPredicted RBP10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 ACSM2AQ08AH3 577 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 NRF1Q16656 503 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 CMPK2Q5EBM0 449 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 ACSM2BQ68CK6 577 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 RPS6KB2Q9UBS0 482 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 VPS4AQ9UN37 437 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 ERCC2P18074 760 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 MARCKSL1P49006 195 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 CYP2A13Q16696 494 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 GJC2Q5T442 439 aaPredicted RBP10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 BANPQ8N9N5 519 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 RAET1EQ8TD07 263 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 PRMT6Q96LA8 375 aaPredicted RBP10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 HDHD2Q9H0R4 259 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 GBA3Q9H227 469 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 RPTORQ8N122 1335 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 NCF1BA6NI72 391 aaPredicted RBP10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 NCF1CA8MVU1 366 aaPredicted RBP10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 ASMTLO95671 621 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 NCF1P14598 390 aaPredicted RBP10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 YWHAQP27348 245 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 FCGRTP55899 365 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 PRKCQQ04759 706 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 SPIDRQ14159 915 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 CELF3Q5SZQ8 465 aaKnown RBP10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 PACS1Q6VY07 963 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 AHI1Q8N157 1196 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 G3V2T6 193 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 STAU1O95793 577 aaKnown RBP10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 UBAP2LQ14157 1087 aaKnown RBP10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 NDUFAF6Q330K2 333 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 USP39Q53GS9 565 aaKnown RBP10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 ARMC12Q5T9G4 340 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 FDXACB1Q9BRP7 624 aaPredicted RBP10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 MTG1Q9BT17 334 aaPredicted RBP10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 WDR18Q9BV38 432 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 SNRNP25Q9BV90 132 aaKnown RBP10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 DKK3Q9UBP4 350 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 ST3GAL5Q9UNP4 418 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 SLC9A8Q9Y2E8 581 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 AGPSO00116 658 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 AP2A1O95782 977 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 PNLIPRP1P54315 467 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 ACTR3P61158 418 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 ACAP2Q15057 778 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 PARP15Q460N3 678 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 C2CD6Q53TS8 623 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 DEFB106AQ8N104 65 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 CSGALNACT1Q8TDX6 532 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 GMPPBQ9Y5P6 360 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 AMPD1P23109 780 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 GSCP56915 257 aaPredicted RBP10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 RHBDL3P58872 404 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 CACNB2Q08289 660 aaPredicted RBP10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 LSM12Q3MHD2 195 aaKnown RBP10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 DACT2Q5SW24 774 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 CYP2R1Q6VVX0 501 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 A0A1W2PQ67 120 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 CCDC162PA2VCL2 907 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 UBA1P22314 1058 aaKnown RBP10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 TPP2P29144 1249 aaPredicted RBP10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 CHRNA5P30532 468 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 CLK2P49760 499 aaKnown RBP10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 SCNN1BP51168 640 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 UNC5AQ6ZN44 842 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 DSELQ8IZU8 1212 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 OR52L1Q8NGH7 329 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 ZNF607Q96SK3 696 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 TKTL2Q9H0I9 626 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 RIBC2Q9H4K1 309 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 PSME2Q9UL46 239 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 CNTNAP2Q9UHC6 1331 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 ADCY6O43306 1168 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 IPO13O94829 963 aaKnown RBP10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 FCHO2Q0JRZ9 810 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 ITGADQ13349 1161 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 MOSPD2Q8NHP6 518 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 ZCWPW1Q9H0M4 648 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 SNTG2Q9NY99 539 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 STXBP5LQ9Y2K9 1186 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 PCDHB1Q9Y5F3 818 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 CHKAP35790 457 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 GSTM5P46439 218 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 SLC25A3Q00325 362 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 ALDH6A1Q02252 535 aaKnown RBP10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 CRY1Q16526 586 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 LBHD1Q9BQE6 289 aaPredicted RBP10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 KLHL31Q9H511 634 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 FBXO6Q9NRD1 293 aaPredicted RBP10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 WWP2O00308 870 aa10.34□□□□□ -0.75
CCDC88A-202ENST00000336838 CCNT2O60583 730 aaKnown RBP10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms