RNA–Protein interactions for RNA: ENST00000334060.8

SHOX-201, Transcript of short stature homeobox, humanhuman

TSL 5 BASIC

Gene SHOX, Length 1,951 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-201ENST00000334060 SIRPB2Q5JXA9 342 aa16.65■□□□□ 0.26
SHOX-201ENST00000334060 CERCAMQ5T4B2 595 aa16.65■□□□□ 0.26
SHOX-201ENST00000334060 ITPRIPL1Q6GPH6 555 aa16.65■□□□□ 0.26
SHOX-201ENST00000334060 PARS2Q7L3T8 475 aaKnown RBP16.65■□□□□ 0.26
SHOX-201ENST00000334060 PNPLA1Q8N8W4 532 aa16.65■□□□□ 0.26
SHOX-201ENST00000334060 ZBTB9Q96C00 473 aa16.65■□□□□ 0.26
SHOX-201ENST00000334060 SNF8Q96H20 258 aa16.65■□□□□ 0.26
SHOX-201ENST00000334060 GDF3Q9NR23 364 aa16.65■□□□□ 0.26
SHOX-201ENST00000334060 TPX2Q9ULW0 747 aaKnown RBP16.65■□□□□ 0.26
SHOX-201ENST00000334060 MMP17Q9ULZ9 603 aa16.65■□□□□ 0.26
SHOX-201ENST00000334060 NFU1Q9UMS0 254 aa16.65■□□□□ 0.26
SHOX-201ENST00000334060 KCTD3Q9Y597 815 aa16.65■□□□□ 0.26
SHOX-201ENST00000334060 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.64■□□□□ 0.25
SHOX-201ENST00000334060 SERPINF2P08697 491 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 F7P08709 466 aaPredicted RBP16.64■□□□□ 0.25
SHOX-201ENST00000334060 GABRG2P18507 467 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 DRD3P35462 400 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 ACTN2P35609 894 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 VASPP50552 380 aaPredicted RBP16.64■□□□□ 0.25
SHOX-201ENST00000334060 MRPS21P82921 87 aaKnown RBP16.64■□□□□ 0.25
SHOX-201ENST00000334060 MSLNQ13421 630 aaPredicted RBP16.64■□□□□ 0.25
SHOX-201ENST00000334060 KDM7AQ6ZMT4 941 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 TSPAN33Q86UF1 283 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 IGDCC3Q8IVU1 814 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 HMGB4Q8WW32 186 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 PIH1D2Q8WWB5 315 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 EID2BQ96D98 161 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 ZNF778Q96MU6 729 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 UTP11Q9Y3A2 253 aaKnown RBP16.64■□□□□ 0.25
SHOX-201ENST00000334060 SIT1Q9Y3P8 196 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 CACNA1IQ9P0X4 2223 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 E7EVH7 732 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 SLC4A1P02730 911 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 ABL2P42684 1182 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 SESN2P58004 480 aaPredicted RBP16.64■□□□□ 0.25
SHOX-201ENST00000334060 RPS14P62263 151 aaKnown RBP16.64■□□□□ 0.25
SHOX-201ENST00000334060 BCL2L1Q07817 233 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 ELAVL3Q14576 367 aaKnown RBP16.64■□□□□ 0.25
SHOX-201ENST00000334060 RANBP10Q6VN20 620 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 GDPD4Q6W3E5 623 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 RFLNAQ6ZTI6 216 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 BBS5Q8N3I7 341 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 MDGA1Q8NFP4 955 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 MSANTD3Q96H12 275 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 MRGPRX1Q96LB2 322 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 SERPINB12Q96P63 405 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 TPSD1Q9BZJ3 242 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 MFSD1Q9H3U5 465 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 SUV39H2Q9H5I1 410 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 FEZ2Q9UHY8 353 aaPredicted RBP16.64■□□□□ 0.25
SHOX-201ENST00000334060 FRYLO94915 3013 aa16.64■□□□□ 0.25
SHOX-201ENST00000334060 LOC285095A0A1B0GVY8 99 aa16.63■□□□□ 0.25
SHOX-201ENST00000334060 CCL22O00626 93 aa16.63■□□□□ 0.25
SHOX-201ENST00000334060 HTRA2O43464 458 aaPredicted RBP16.63■□□□□ 0.25
SHOX-201ENST00000334060 PGLSO95336 258 aa16.63■□□□□ 0.25
SHOX-201ENST00000334060 POP4O95707 220 aaKnown RBP16.63■□□□□ 0.25
SHOX-201ENST00000334060 FDFT1P37268 417 aa16.63■□□□□ 0.25
SHOX-201ENST00000334060 RECQLP46063 649 aaPredicted RBP16.63■□□□□ 0.25
SHOX-201ENST00000334060 AP1S1P61966 158 aa16.63■□□□□ 0.25
SHOX-201ENST00000334060 TUBB4BP68371 445 aa16.63■□□□□ 0.25
SHOX-201ENST00000334060 CDK18Q07002 472 aa16.63■□□□□ 0.25
SHOX-201ENST00000334060 SLC1A5Q15758 541 aa16.63■□□□□ 0.25
SHOX-201ENST00000334060 PREPLQ4J6C6 727 aaPredicted RBP16.63■□□□□ 0.25
SHOX-201ENST00000334060 ANO7Q6IWH7 933 aa16.63■□□□□ 0.25
SHOX-201ENST00000334060 CES3Q6UWW8 571 aa16.63■□□□□ 0.25
SHOX-201ENST00000334060 NUDT18Q6ZVK8 323 aa16.63■□□□□ 0.25
SHOX-201ENST00000334060 TMPRSS6Q8IU80 811 aa16.63■□□□□ 0.25
SHOX-201ENST00000334060 TMEM105Q8N8V8 129 aa16.63■□□□□ 0.25
SHOX-201ENST00000334060 KDM1BQ8NB78 822 aa16.63■□□□□ 0.25
SHOX-201ENST00000334060 ART4Q93070 314 aa16.63■□□□□ 0.25
SHOX-201ENST00000334060 CLDN23Q96B33 292 aa16.63■□□□□ 0.25
SHOX-201ENST00000334060 RUNDC3BQ96NL0 473 aa16.63■□□□□ 0.25
SHOX-201ENST00000334060 TBL1YQ9BQ87 522 aa16.63■□□□□ 0.25
SHOX-201ENST00000334060 RSPH9Q9H1X1 276 aaPredicted RBP16.63■□□□□ 0.25
SHOX-201ENST00000334060 C11orf16Q9NQ32 467 aa16.63■□□□□ 0.25
SHOX-201ENST00000334060 EBF1Q9UH73 591 aa16.63■□□□□ 0.25
SHOX-201ENST00000334060 SHOC2Q9UQ13 582 aa16.63■□□□□ 0.25
SHOX-201ENST00000334060 A0A1W2PP55 124 aa16.62■□□□□ 0.25
SHOX-201ENST00000334060 TMEM221A6NGB7 291 aa16.62■□□□□ 0.25
SHOX-201ENST00000334060 M0R296 226 aa16.62■□□□□ 0.25
SHOX-201ENST00000334060 SYNCRIPO60506 623 aaKnown RBP16.62■□□□□ 0.25
SHOX-201ENST00000334060 MAGEA6P43360 314 aa16.62■□□□□ 0.25
SHOX-201ENST00000334060 CSNK1DP48730 415 aa16.62■□□□□ 0.25
SHOX-201ENST00000334060 LMAN1P49257 510 aa16.62■□□□□ 0.25
SHOX-201ENST00000334060 CNTN1Q12860 1018 aa16.62■□□□□ 0.25
SHOX-201ENST00000334060 QPCTQ16769 361 aa16.62■□□□□ 0.25
SHOX-201ENST00000334060 FBXO43Q4G163 708 aa16.62■□□□□ 0.25
SHOX-201ENST00000334060 SYDE1Q6ZW31 735 aaPredicted RBP16.62■□□□□ 0.25
SHOX-201ENST00000334060 FAM124AQ86V42 546 aa16.62■□□□□ 0.25
SHOX-201ENST00000334060 PPIL6Q8IXY8 311 aa16.62■□□□□ 0.25
SHOX-201ENST00000334060 FAM160A2Q8N612 972 aaPredicted RBP16.62■□□□□ 0.25
SHOX-201ENST00000334060 GOLGA6L1Q8N7Z2 621 aa16.62■□□□□ 0.25
SHOX-201ENST00000334060 RLN3Q8WXF3 142 aa16.62■□□□□ 0.25
SHOX-201ENST00000334060 OR8D1Q8WZ84 308 aa16.62■□□□□ 0.25
SHOX-201ENST00000334060 UBXN4Q92575 508 aa16.62■□□□□ 0.25
SHOX-201ENST00000334060 ECHDC3Q96DC8 303 aa16.62■□□□□ 0.25
SHOX-201ENST00000334060 SHDQ96IW2 340 aa16.62■□□□□ 0.25
SHOX-201ENST00000334060 FERMT1Q9BQL6 677 aa16.62■□□□□ 0.25
SHOX-201ENST00000334060 FSD1LQ9BXM9 530 aa16.62■□□□□ 0.25
SHOX-201ENST00000334060 COL25A1Q9BXS0 654 aaPredicted RBP16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms