RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 VPS45Q9NRW7 570 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 SEMA4GQ9NTN9 838 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 OTOGLQ3ZCN5 2332 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 A0A1W2PQU0 124 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 PATE3B3GLJ2 98 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 SPINT1O43278 529 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 MTSS1O43312 755 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 AP1G1O43747 822 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 CPP00450 1065 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 PRKCGP05129 697 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 RBP3P10745 1247 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 ITIH2P19823 946 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 CD27P26842 260 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 HOXD12P35452 270 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 NIPAL4Q0D2K0 466 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 UGP2Q16851 508 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 TEX44Q53QW1 395 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 PEAR1Q5VY43 1037 aaPredicted RBP16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 SEL1L3Q68CR1 1132 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 TCEAL6Q6IPX3 200 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 NEK5Q6P3R8 708 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 DARS2Q6PI48 645 aaKnown RBP16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 ADAT2Q7Z6V5 191 aaKnown RBP16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 TTC13Q8NBP0 860 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 ARRDC2Q8TBH0 407 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 KLK6Q92876 244 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 TCEAL3Q969E4 200 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 ECHDC3Q96DC8 303 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 SUSD2Q9UGT4 822 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 R3HDM2Q9Y2K5 976 aaKnown RBP16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 JRKLQ9Y4A0 524 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 RAI2Q9Y5P3 530 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 SLCO1B1Q9Y6L6 691 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 A0A1W2PPC4 97 aa16.02■□□□□ 0.15
CCDC28A-201ENST00000332797 C10orf142B7Z368 130 aa16.02■□□□□ 0.15
CCDC28A-201ENST00000332797 AREL1O15033 823 aa16.02■□□□□ 0.15
CCDC28A-201ENST00000332797 HTRA2O43464 458 aaPredicted RBP16.02■□□□□ 0.15
CCDC28A-201ENST00000332797 TSPAN6O43657 245 aa16.02■□□□□ 0.15
CCDC28A-201ENST00000332797 CFIP05156 583 aa16.02■□□□□ 0.15
CCDC28A-201ENST00000332797 SERPINF2P08697 491 aa16.02■□□□□ 0.15
CCDC28A-201ENST00000332797 GNSP15586 552 aa16.02■□□□□ 0.15
CCDC28A-201ENST00000332797 RBL1P28749 1068 aa16.02■□□□□ 0.15
CCDC28A-201ENST00000332797 CD86P42081 329 aa16.02■□□□□ 0.15
CCDC28A-201ENST00000332797 SUOXP51687 545 aa16.02■□□□□ 0.15
CCDC28A-201ENST00000332797 ELP6Q0PNE2 266 aa16.02■□□□□ 0.15
CCDC28A-201ENST00000332797 WASHC5Q12768 1159 aa16.02■□□□□ 0.15
CCDC28A-201ENST00000332797 SF3A2Q15428 464 aaKnown RBP16.02■□□□□ 0.15
CCDC28A-201ENST00000332797 CSRP2Q16527 193 aa16.02■□□□□ 0.15
CCDC28A-201ENST00000332797 TRIM61Q5EBN2 209 aa16.02■□□□□ 0.15
CCDC28A-201ENST00000332797 KIAA1161Q6NSJ0 714 aa16.02■□□□□ 0.15
CCDC28A-201ENST00000332797 ERAP2Q6P179 960 aa16.02■□□□□ 0.15
CCDC28A-201ENST00000332797 PRPF39Q86UA1 669 aaKnown RBP16.02■□□□□ 0.15
CCDC28A-201ENST00000332797 HORMAD1Q86X24 394 aa16.02■□□□□ 0.15
CCDC28A-201ENST00000332797 SLC13A5Q86YT5 568 aaPredicted RBP16.02■□□□□ 0.15
CCDC28A-201ENST00000332797 FERMT1Q9BQL6 677 aa16.02■□□□□ 0.15
CCDC28A-201ENST00000332797 EBF2Q9HAK2 575 aa16.02■□□□□ 0.15
CCDC28A-201ENST00000332797 PCDH12Q9NPG4 1184 aa16.02■□□□□ 0.15
CCDC28A-201ENST00000332797 KLHL8Q9P2G9 620 aaPredicted RBP16.02■□□□□ 0.15
CCDC28A-201ENST00000332797 TPX2Q9ULW0 747 aaKnown RBP16.02■□□□□ 0.15
CCDC28A-201ENST00000332797 ZFR2Q9UPR6 939 aaKnown RBP16.02■□□□□ 0.15
CCDC28A-201ENST00000332797 PCDHB9Q9Y5E1 797 aa16.02■□□□□ 0.15
CCDC28A-201ENST00000332797 PLXNA2O75051 1894 aa16.01■□□□□ 0.15
CCDC28A-201ENST00000332797 LATO43561 262 aa16.01■□□□□ 0.15
CCDC28A-201ENST00000332797 ZNF806P0C7X5 589 aa16.01■□□□□ 0.15
CCDC28A-201ENST00000332797 PRLRP16471 622 aa16.01■□□□□ 0.15
CCDC28A-201ENST00000332797 MSNP26038 577 aaKnown RBP16.01■□□□□ 0.15
CCDC28A-201ENST00000332797 CXCR5P32302 372 aa16.01■□□□□ 0.15
CCDC28A-201ENST00000332797 POLR2LP62875 67 aaKnown RBP16.01■□□□□ 0.15
CCDC28A-201ENST00000332797 RPS21P63220 83 aaKnown RBP16.01■□□□□ 0.15
CCDC28A-201ENST00000332797 FAM193AP78312 1265 aa16.01■□□□□ 0.15
CCDC28A-201ENST00000332797 SEMG2Q02383 582 aa16.01■□□□□ 0.15
CCDC28A-201ENST00000332797 IHHQ14623 411 aa16.01■□□□□ 0.15
CCDC28A-201ENST00000332797 DUOXA1Q1HG43 343 aa16.01■□□□□ 0.15
CCDC28A-201ENST00000332797 SETMARQ53H47 684 aaPredicted RBP16.01■□□□□ 0.15
CCDC28A-201ENST00000332797 ARMC12Q5T9G4 340 aa16.01■□□□□ 0.15
CCDC28A-201ENST00000332797 RABEPKQ7Z6M1 372 aa16.01■□□□□ 0.15
CCDC28A-201ENST00000332797 CEP76Q8TAP6 659 aa16.01■□□□□ 0.15
CCDC28A-201ENST00000332797 CXorf40AQ8TE69 158 aa16.01■□□□□ 0.15
CCDC28A-201ENST00000332797 FEM1CQ96JP0 617 aa16.01■□□□□ 0.15
CCDC28A-201ENST00000332797 TEKT5Q96M29 485 aa16.01■□□□□ 0.15
CCDC28A-201ENST00000332797 RBM15Q96T37 977 aaKnown RBP eCLIP16.01■□□□□ 0.15
CCDC28A-201ENST00000332797 ORAI3Q9BRQ5 295 aa16.01■□□□□ 0.15
CCDC28A-201ENST00000332797 WRAP53Q9BUR4 548 aaKnown RBP16.01■□□□□ 0.15
CCDC28A-201ENST00000332797 GLOD4Q9HC38 313 aa16.01■□□□□ 0.15
CCDC28A-201ENST00000332797 ZNF292O60281 2723 aa16.01■□□□□ 0.15
CCDC28A-201ENST00000332797 A0A1B0GTW7 788 aa16■□□□□ 0.15
CCDC28A-201ENST00000332797 A0A1W2PQ67 120 aa16■□□□□ 0.15
CCDC28A-201ENST00000332797 RIOK3O14730 519 aaKnown RBP16■□□□□ 0.15
CCDC28A-201ENST00000332797 KHNYNO15037 678 aaKnown RBP16■□□□□ 0.15
CCDC28A-201ENST00000332797 BCAT2O15382 392 aaPredicted RBP16■□□□□ 0.15
CCDC28A-201ENST00000332797 KCNN4O15554 427 aa16■□□□□ 0.15
CCDC28A-201ENST00000332797 CEP104O60308 925 aa16■□□□□ 0.15
CCDC28A-201ENST00000332797 PGLSO95336 258 aa16■□□□□ 0.15
CCDC28A-201ENST00000332797 MMP2P08253 660 aa16■□□□□ 0.15
CCDC28A-201ENST00000332797 NFKB1P19838 968 aa16■□□□□ 0.15
CCDC28A-201ENST00000332797 TGM1P22735 817 aa16■□□□□ 0.15
CCDC28A-201ENST00000332797 CA4P22748 312 aa16■□□□□ 0.15
CCDC28A-201ENST00000332797 SKOR1P84550 965 aa16■□□□□ 0.15
CCDC28A-201ENST00000332797 ZNF284Q2VY69 593 aa16■□□□□ 0.15
CCDC28A-201ENST00000332797 TMEM259Q4ZIN3 620 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms