RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 AP4E1Q9UPM8 1137 aa12.9□□□□□ -0.34
CD44-203ENST00000278386 SATB2Q9UPW6 733 aa12.9□□□□□ -0.34
CD44-203ENST00000278386 TEX51A0A1B0GUA7 166 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 EME2A4GXA9 379 aaPredicted RBP12.89□□□□□ -0.35
CD44-203ENST00000278386 TMCO5BA8MYB1 307 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 TPP1O14773 563 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 ATXN7O15265 892 aaPredicted RBP12.89□□□□□ -0.35
CD44-203ENST00000278386 ATMINO43313 823 aaPredicted RBP12.89□□□□□ -0.35
CD44-203ENST00000278386 GCATO75600 419 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 PCCBP05166 539 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 CCDC172P0C7W6 258 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 C6P13671 934 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 TIMP2P16035 220 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 FERP16591 822 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 PSMA2P25787 234 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 LSSP48449 732 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 GRM3Q14832 879 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 ISXQ2M1V0 245 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 PERM1Q5SV97 790 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 ESRP1Q6NXG1 681 aaKnown RBP12.89□□□□□ -0.35
CD44-203ENST00000278386 ERAP2Q6P179 960 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 FOXR1Q6PIV2 292 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 RBM43Q6ZSC3 357 aaKnown RBP12.89□□□□□ -0.35
CD44-203ENST00000278386 HID1Q8IV36 788 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 SLC35F3Q8IY50 421 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 MCOLN2Q8IZK6 566 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 TPCN2Q8NHX9 752 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 NAT6Q93015 286 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 VOPP1Q96AW1 172 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 ATXN7L3BQ96GX2 97 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 CELF6Q96J87 481 aaKnown RBP12.89□□□□□ -0.35
CD44-203ENST00000278386 VCPIP1Q96JH7 1222 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 GBP4Q96PP9 640 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 ERGIC2Q96RQ1 377 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 BOCQ9BWV1 1114 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 DHX35Q9H5Z1 703 aaKnown RBP12.89□□□□□ -0.35
CD44-203ENST00000278386 SIRPGQ9P1W8 387 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 PNMA8BQ9ULN7 279 aaPredicted RBP12.89□□□□□ -0.35
CD44-203ENST00000278386 MFHAS1Q9Y4C4 1052 aa12.89□□□□□ -0.35
CD44-203ENST00000278386 TCRBV5S1A1TA0A578 114 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 ARHGAP42A6NI28 874 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 WASH4PA8MWX3 477 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 LMO7DNF2Z398 122 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 EEF2KO00418 725 aaKnown RBP12.88□□□□□ -0.35
CD44-203ENST00000278386 TOR1BO14657 336 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 TCEA3O75764 348 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 DXOO77932 396 aaKnown RBP12.88□□□□□ -0.35
CD44-203ENST00000278386 CELA2BP08218 269 aaPredicted RBP12.88□□□□□ -0.35
CD44-203ENST00000278386 CTSEP14091 401 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 TSHRP16473 764 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 HTR1BP28222 390 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 RBMS1P29558 406 aaKnown RBP12.88□□□□□ -0.35
CD44-203ENST00000278386 HTR7P34969 479 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 BLKP51451 505 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 SUOXP51687 545 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 TMPRSS3P57727 454 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 ERVPABLB-1P60509 514 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 SPIDRQ14159 915 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 LRRC14Q15048 493 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 ELOCQ15369 112 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 CYTH1Q15438 398 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 ACAD10Q6JQN1 1059 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 UMODL1-AS1Q8N2C9 162 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 AOPEPQ8N6M6 819 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 KYQ8NBH2 561 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 PCDH19Q8TAB3 1148 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 TBATAQ96M53 351 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 CCDC3Q9BQI4 270 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 CINPQ9BW66 212 aaPredicted RBP12.88□□□□□ -0.35
CD44-203ENST00000278386 CPEB1Q9BZB8 566 aaKnown RBP12.88□□□□□ -0.35
CD44-203ENST00000278386 CLPBQ9H078 707 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 SUV39H2Q9H5I1 410 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 SP110Q9HB58 689 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 PCDH12Q9NPG4 1184 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 DONSONQ9NYP3 566 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 GULP1Q9UBP9 304 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 ENTPD2Q9Y5L3 495 aa12.88□□□□□ -0.35
CD44-203ENST00000278386 TSPAN11A1L157 253 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 GOLGA6L22H0YM25 854 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 J3KR12 359 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 YY2O15391 372 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 KLK10O43240 276 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 DAPK3O43293 454 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 LZTS3O60299 673 aaPredicted RBP12.87□□□□□ -0.35
CD44-203ENST00000278386 RASGRP1O95267 797 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 PRKCGP05129 697 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 ALPIP09923 528 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 TNFAIP3P21580 790 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 SERPINA4P29622 427 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 MMP12P39900 470 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 NDST2P52849 883 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 UCNP55089 124 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 OGDHQ02218 1023 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 C19orf57Q0VDD7 668 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 NFATC4Q14934 902 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 UGP2Q16851 508 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 TMEM52BQ4KMG9 183 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 PPP1R15BQ5SWA1 713 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 PPP1R2P3Q6NXS1 205 aa12.87□□□□□ -0.35
CD44-203ENST00000278386 BRAT1Q6PJG6 821 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms