RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 PIN4Q9Y237 131 aaKnown RBP13.09□□□□□ -0.31
SNX1-201ENST00000261889 MYRFQ9Y2G1 1151 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 ZNF236Q9UL36 1845 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 UBDO15205 165 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 INPP4BO15327 924 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 GJA5P36382 358 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 MATKP42679 507 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 IST1P53990 364 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 LSM3P62310 102 aaKnown RBP13.09□□□□□ -0.31
SNX1-201ENST00000261889 PRKCQQ04759 706 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 PMS2P3Q13401 168 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 TRIM25Q14258 630 aaKnown RBP13.09□□□□□ -0.31
SNX1-201ENST00000261889 KIAA0319Q5VV43 1072 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 ELMSAN1Q6PJG2 1045 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 ZYG11AQ6WRX3 759 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 SLC26A9Q7LBE3 791 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 BTLAQ7Z6A9 289 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 TFAP2DQ7Z6R9 452 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 TICAM1Q8IUC6 712 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 RAVER1Q8IY67 606 aaKnown RBP13.09□□□□□ -0.31
SNX1-201ENST00000261889 KLHL23Q8NBE8 558 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 BPIFB6Q8NFQ5 453 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 KLHL5Q96PQ7 755 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 C1QTNF1Q9BXJ1 281 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 TKTL2Q9H0I9 626 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 POLR1BQ9H9Y6 1135 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 TIMM22Q9Y584 194 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 A8MU76 341 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 UBFD1O14562 309 aaKnown RBP13.09□□□□□ -0.31
SNX1-201ENST00000261889 BAIAP3O94812 1187 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 AP2A1O95782 977 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 ELK4P28324 431 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 ICAM3P32942 547 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 GGT5P36269 586 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 PGFP49763 221 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 SLC12A2P55011 1212 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 TRAF2Q12933 501 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 SPANXN3Q5MJ09 141 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 THAP11Q96EK4 314 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 SMIM14Q96QK8 99 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 NCKIPSDQ9NZQ3 722 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 SELENONQ9NZV5 590 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 C5orf42Q9H799 3197 aa13.09□□□□□ -0.31
SNX1-201ENST00000261889 GOLGA4Q13439 2230 aaKnown RBP13.08□□□□□ -0.31
SNX1-201ENST00000261889 IGKV6-21A0A0C4DH24 114 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 A0A0G2JLL6 359 aaPredicted RBP13.08□□□□□ -0.32
SNX1-201ENST00000261889 HEATR9A2RTY3 570 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 EI24O14681 340 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 STRNO43815 780 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 STMN1P16949 149 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 NR2C2P49116 596 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 PRKAA1Q13131 559 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 GRB7Q14451 532 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 GPR158Q5T848 1215 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 LBX2Q6XYB7 198 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 PRRT2Q7Z6L0 340 aaPredicted RBP13.08□□□□□ -0.32
SNX1-201ENST00000261889 CLEC14AQ86T13 490 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 ADCY4Q8NFM4 1077 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 SREK1Q8WXA9 508 aaKnown RBP13.08□□□□□ -0.32
SNX1-201ENST00000261889 ISOC1Q96CN7 298 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 ITCHQ96J02 903 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 MTG1Q9BT17 334 aaPredicted RBP13.08□□□□□ -0.32
SNX1-201ENST00000261889 C1orf50Q9BV19 199 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 TRIM38O00635 465 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 HUS1O60921 280 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 LRIG2O94898 1065 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 LINC00032P0C843 101 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 VARSP26640 1264 aaKnown RBP13.08□□□□□ -0.32
SNX1-201ENST00000261889 GRM1Q13255 1194 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 C6orf10Q5SRN2 563 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 PRAMEF19Q5SWL8 479 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 TMEM135Q86UB9 458 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 EPHX4Q8IUS5 362 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 SPPL2BQ8TCT7 592 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 TMEM40Q8WWA1 233 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 PAAF1Q9BRP4 392 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 ZNF696Q9H7X3 374 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 DUS2Q9NX74 493 aaKnown RBP13.08□□□□□ -0.32
SNX1-201ENST00000261889 OR12D3Q9UGF7 316 aa13.08□□□□□ -0.32
SNX1-201ENST00000261889 FYNP06241 537 aa13.07□□□□□ -0.32
SNX1-201ENST00000261889 CBX3Q13185 183 aa13.07□□□□□ -0.32
SNX1-201ENST00000261889 AARS2Q5JTZ9 985 aaKnown RBP13.07□□□□□ -0.32
SNX1-201ENST00000261889 FBXO47Q5MNV8 452 aa13.07□□□□□ -0.32
SNX1-201ENST00000261889 PERM1Q5SV97 790 aa13.07□□□□□ -0.32
SNX1-201ENST00000261889 TMEM214Q6NUQ4 689 aaKnown RBP13.07□□□□□ -0.32
SNX1-201ENST00000261889 SAPCD2Q86UD0 394 aa13.07□□□□□ -0.32
SNX1-201ENST00000261889 CUZD1Q86UP6 607 aa13.07□□□□□ -0.32
SNX1-201ENST00000261889 ANKRD13AQ8IZ07 590 aa13.07□□□□□ -0.32
SNX1-201ENST00000261889 ANKRD52Q8NB46 1076 aa13.07□□□□□ -0.32
SNX1-201ENST00000261889 VPS50Q96JG6 964 aa13.07□□□□□ -0.32
SNX1-201ENST00000261889 ZFRQ96KR1 1074 aaKnown RBP13.07□□□□□ -0.32
SNX1-201ENST00000261889 PLEKHG4BQ96PX9 1271 aa13.07□□□□□ -0.32
SNX1-201ENST00000261889 PLEKHA5Q9HAU0 1116 aa13.07□□□□□ -0.32
SNX1-201ENST00000261889 CORINQ9Y5Q5 1042 aa13.07□□□□□ -0.32
SNX1-201ENST00000261889 MYBPHLA2RUH7 354 aa13.07□□□□□ -0.32
SNX1-201ENST00000261889 DPYSL4O14531 572 aa13.07□□□□□ -0.32
SNX1-201ENST00000261889 SNAP29O95721 258 aa13.07□□□□□ -0.32
SNX1-201ENST00000261889 ARNTP27540 789 aa13.07□□□□□ -0.32
SNX1-201ENST00000261889 KCTD2Q14681 263 aa13.07□□□□□ -0.32
SNX1-201ENST00000261889 POLD3Q15054 466 aaPredicted RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms