RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 TCEAL2Q9H3H9 227 aaPredicted RBP10.45□□□□□ -0.74
VPS50-201ENST00000251739 POLR1BQ9H9Y6 1135 aa10.45□□□□□ -0.74
VPS50-201ENST00000251739 NCKIPSDQ9NZQ3 722 aa10.45□□□□□ -0.74
VPS50-201ENST00000251739 CHMP5Q9NZZ3 219 aa10.45□□□□□ -0.74
VPS50-201ENST00000251739 DKK3Q9UBP4 350 aa10.45□□□□□ -0.74
VPS50-201ENST00000251739 LHX3Q9UBR4 397 aa10.45□□□□□ -0.74
VPS50-201ENST00000251739 SALL4Q9UJQ4 1053 aa10.45□□□□□ -0.74
VPS50-201ENST00000251739 MFHAS1Q9Y4C4 1052 aa10.45□□□□□ -0.74
VPS50-201ENST00000251739 BOD1L1Q8NFC6 3051 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 TSPAN11A1L157 253 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 WASH4PA8MWX3 477 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 LMO7DNF2Z398 122 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 KRIT1O00522 736 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 PES1O00541 588 aaKnown RBP10.44□□□□□ -0.74
VPS50-201ENST00000251739 TOR1BO14657 336 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 KDELR3O43731 214 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 USP12O75317 370 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 GCATO75600 419 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 TMCC1O94876 653 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 PDX1P52945 283 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 SGCGQ13326 291 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 POLD3Q15054 466 aaPredicted RBP10.44□□□□□ -0.74
VPS50-201ENST00000251739 CDKN3Q16667 212 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 CLEC16AQ2KHT3 1053 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 DEFB133Q30KQ1 61 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 INO80DQ53TQ3 878 aaPredicted RBP10.44□□□□□ -0.74
VPS50-201ENST00000251739 LRRC73Q5JTD7 316 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 RWDD4Q6NW29 188 aaKnown RBP10.44□□□□□ -0.74
VPS50-201ENST00000251739 WDR59Q6PJI9 974 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 GDPD4Q6W3E5 623 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 LEKR1Q6ZMV7 388 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 MACC1Q6ZN28 852 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 CLEC17AQ6ZS10 378 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 RBM43Q6ZSC3 357 aaKnown RBP10.44□□□□□ -0.74
VPS50-201ENST00000251739 MON1BQ7L1V2 547 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 GPR155Q7Z3F1 870 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 SLC35F3Q8IY50 421 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 RBFAQ8N0V3 343 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 LSMEM2Q8N112 164 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 UMODL1-AS1Q8N2C9 162 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 PYROXD2Q8N2H3 581 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 RTL3Q8N8U3 475 aaKnown RBP10.44□□□□□ -0.74
VPS50-201ENST00000251739 TP53I13Q8NBR0 393 aaPredicted RBP10.44□□□□□ -0.74
VPS50-201ENST00000251739 MAPK15Q8TD08 544 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 SNRNP27Q8WVK2 155 aaKnown RBP10.44□□□□□ -0.74
VPS50-201ENST00000251739 CASKIN2Q8WXE0 1202 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 GRAMD1AQ96CP6 724 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 PRR11Q96HE9 360 aaPredicted RBP10.44□□□□□ -0.74
VPS50-201ENST00000251739 GDAP1L1Q96MZ0 367 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 KLHL32Q96NJ5 620 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 LGMNQ99538 433 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 TTYH3Q9C0H2 523 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 FAM207AQ9NSI2 230 aaPredicted RBP10.44□□□□□ -0.74
VPS50-201ENST00000251739 PTPN13Q12923 2485 aa10.44□□□□□ -0.74
VPS50-201ENST00000251739 SIGLEC16A6NMB1 481 aa10.43□□□□□ -0.74
VPS50-201ENST00000251739 CASC3O15234 703 aaKnown RBP10.43□□□□□ -0.74
VPS50-201ENST00000251739 CCP110O43303 1012 aa10.43□□□□□ -0.74
VPS50-201ENST00000251739 TCEA3O75764 348 aa10.43□□□□□ -0.74
VPS50-201ENST00000251739 KRT3P12035 628 aa10.43□□□□□ -0.74
VPS50-201ENST00000251739 GPD1P21695 349 aa10.43□□□□□ -0.74
VPS50-201ENST00000251739 NSFP46459 744 aaKnown RBP10.43□□□□□ -0.74
VPS50-201ENST00000251739 YBEYP58557 167 aaPredicted RBP10.43□□□□□ -0.74
VPS50-201ENST00000251739 YPEL5P62699 121 aa10.43□□□□□ -0.74
VPS50-201ENST00000251739 PRR20EP86478 221 aa10.43□□□□□ -0.74
VPS50-201ENST00000251739 PRR20CP86479 221 aa10.43□□□□□ -0.74
VPS50-201ENST00000251739 PRR20DP86480 221 aa10.43□□□□□ -0.74
VPS50-201ENST00000251739 PRR20BP86481 221 aa10.43□□□□□ -0.74
VPS50-201ENST00000251739 PRR20AP86496 221 aa10.43□□□□□ -0.74
VPS50-201ENST00000251739 SERINC3Q13530 473 aa10.43□□□□□ -0.74
VPS50-201ENST00000251739 AGERQ15109 404 aa10.43□□□□□ -0.74
VPS50-201ENST00000251739 PERM1Q5SV97 790 aa10.43□□□□□ -0.74
VPS50-201ENST00000251739 EFL1Q7Z2Z2 1120 aaKnown RBP10.43□□□□□ -0.74
VPS50-201ENST00000251739 PHLDB2Q86SQ0 1253 aa10.43□□□□□ -0.74
VPS50-201ENST00000251739 PHACTR4Q8IZ21 702 aa10.43□□□□□ -0.74
VPS50-201ENST00000251739 BTN2A2Q8WVV5 523 aa10.43□□□□□ -0.74
VPS50-201ENST00000251739 HMCESQ96FZ2 354 aa10.43□□□□□ -0.74
VPS50-201ENST00000251739 CPEB1Q9BZB8 566 aaKnown RBP10.43□□□□□ -0.74
VPS50-201ENST00000251739 CLPBQ9H078 707 aa10.43□□□□□ -0.74
VPS50-201ENST00000251739 VPS16Q9H269 839 aa10.43□□□□□ -0.74
VPS50-201ENST00000251739 PDFQ9HBH1 243 aa10.43□□□□□ -0.74
VPS50-201ENST00000251739 NLRC4Q9NPP4 1024 aa10.43□□□□□ -0.74
VPS50-201ENST00000251739 MBNL1Q9NR56 388 aaKnown RBP10.43□□□□□ -0.74
VPS50-201ENST00000251739 ADAM22Q9P0K1 906 aa10.43□□□□□ -0.74
VPS50-201ENST00000251739 SPASTQ9UBP0 616 aa10.43□□□□□ -0.74
VPS50-201ENST00000251739 APOBEC3BQ9UH17 382 aaKnown RBP10.43□□□□□ -0.74
VPS50-201ENST00000251739 HPCAL4Q9UM19 191 aa10.43□□□□□ -0.74
VPS50-201ENST00000251739 ENTPD2Q9Y5L3 495 aa10.43□□□□□ -0.74
VPS50-201ENST00000251739 BSNQ9UPA5 3926 aa10.42□□□□□ -0.74
VPS50-201ENST00000251739 PMS2P1A4D2B8 440 aa10.42□□□□□ -0.74
VPS50-201ENST00000251739 EIF4E1BA6NMX2 242 aaKnown RBP10.42□□□□□ -0.74
VPS50-201ENST00000251739 CDRT15L2A8MXV6 281 aa10.42□□□□□ -0.74
VPS50-201ENST00000251739 RASA4BC9J798 803 aa10.42□□□□□ -0.74
VPS50-201ENST00000251739 NTN3O00634 580 aaPredicted RBP10.42□□□□□ -0.74
VPS50-201ENST00000251739 NEMP1O14524 444 aa10.42□□□□□ -0.74
VPS50-201ENST00000251739 RASA4O43374 803 aa10.42□□□□□ -0.74
VPS50-201ENST00000251739 MMP20O60882 483 aa10.42□□□□□ -0.74
VPS50-201ENST00000251739 IGSF6O95976 241 aa10.42□□□□□ -0.74
VPS50-201ENST00000251739 CALB1P05937 261 aa10.42□□□□□ -0.74
VPS50-201ENST00000251739 TIMP2P16035 220 aa10.42□□□□□ -0.74
VPS50-201ENST00000251739 ITIH2P19823 946 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms