RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 GOLGA6L3A6NEY3 463 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 NPIPB13A6NJU9 1138 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 NPIPB5A8MRT5 1133 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 LGALS16A8MUM7 142 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 TDRD15B5MCY1 1934 aaKnown RBP0.51□□□□□ -2.33
VPS35-212ENST00000640313 NPIPB4C9JG80 1138 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 HHLA1C9JL84 531 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 ZNF587BE7ETH6 402 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 PSMD14O00487 310 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 ACKR2O00590 384 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 TCERG1O14776 1098 aaKnown RBP0.51□□□□□ -2.33
VPS35-212ENST00000640313 CAPN9O14815 690 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 HNRNPDLO14979 420 aaKnown RBP0.51□□□□□ -2.33
VPS35-212ENST00000640313 ZSCAN9O15535 394 aaPredicted RBP0.51□□□□□ -2.33
VPS35-212ENST00000640313 COQ9O75208 318 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 ZNF821O75541 412 aaPredicted RBP0.51□□□□□ -2.33
VPS35-212ENST00000640313 KDM4BO94953 1096 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 CLDN7O95471 211 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 CLDN14O95500 239 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 CER1O95813 267 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 CH25HO95992 272 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 VIPP01282 170 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 ALDOAP04075 364 aaKnown RBP0.51□□□□□ -2.33
VPS35-212ENST00000640313 INHBAP08476 426 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 CSF1P09603 554 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 ALDOCP09972 364 aaKnown RBP0.51□□□□□ -2.33
VPS35-212ENST00000640313 LINC00271P0C7V0 271 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 LYL1P12980 280 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 PRPH2P23942 346 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 YY1P25490 414 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 AVPR2P30518 371 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 SSTR2P30874 369 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 PPM1AP35813 382 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 LIFRP42702 1097 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 PTGER3P43115 390 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 HTR3AP46098 478 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 ATRXP46100 2492 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 GSTM5P46439 218 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 HLCSP50747 726 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 AK2P54819 239 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 TMPRSS3P57727 454 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 BRWD1-AS2P59051 145 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 SF3A3Q12874 501 aaKnown RBP eCLIP0.51□□□□□ -2.33
VPS35-212ENST00000640313 ZNF155Q12901 538 aaPredicted RBP0.51□□□□□ -2.33
VPS35-212ENST00000640313 LRMPQ12912 555 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 TBX2Q13207 712 aaPredicted RBP0.51□□□□□ -2.33
VPS35-212ENST00000640313 DCTN1Q14203 1278 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 PTK2BQ14289 1009 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 CSHL1Q14406 222 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 BTBD16Q32M84 506 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 SNAI3Q3KNW1 292 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 ARL13BQ3SXY8 428 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 MAP9Q49MG5 647 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 CCNYL2Q5T2Q4 361 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 TBC1D9BQ66K14 1250 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 IL31Q6EBC2 164 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 CCSAPQ6IQ19 270 aaPredicted RBP0.51□□□□□ -2.33
VPS35-212ENST00000640313 FAM166AQ6J272 317 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 ZNF343Q6P1L6 599 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 WDR93Q6P2C0 686 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 TMEM88Q6PEY1 159 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 KIAA1324Q6UXG2 1013 aaKnown RBP0.51□□□□□ -2.33
VPS35-212ENST00000640313 CEACAM20Q6UY09 585 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 C15orf39Q6ZRI6 1047 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 Q6ZVH6 145 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 RASGRP2Q7LDG7 609 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 C11orf96Q7Z7L8 435 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 DSG4Q86SJ6 1040 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 ADGRA1Q86SQ6 560 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 LRRTM1Q86UE6 522 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 SATL1Q86VE3 508 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 CCDC25Q86WR0 208 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 SFR1Q86XK3 245 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 KLBQ86Z14 1044 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 KRTAP11-1Q8IUC1 163 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 RASGRP3Q8IV61 690 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 ZNF584Q8IVC4 421 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 SLC44A2Q8IWA5 706 aaPredicted RBP0.51□□□□□ -2.33
VPS35-212ENST00000640313 CACNA2D3Q8IZS8 1091 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 RBFAQ8N0V3 343 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 TXLNBQ8N3L3 684 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 TMEM217Q8N7C4 229 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 KCNH5Q8NCM2 988 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 FAM110DQ8TAY7 271 aaPredicted RBP0.51□□□□□ -2.33
VPS35-212ENST00000640313 FAM71BQ8TC56 605 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 PARD3BQ8TEW8 1205 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 RSC1A1Q92681 617 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 TAAR8Q969N4 342 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 ZNF566Q969W8 418 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 EID2BQ96D98 161 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 ALG14Q96F25 216 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 TMEM41AQ96HV5 264 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 ART5Q96L15 291 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 FRG2BQ96QU4 278 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 ZNF300Q96RE9 604 aaPredicted RBP0.51□□□□□ -2.33
VPS35-212ENST00000640313 RMDN3Q96TC7 470 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 FSD1Q9BTV5 496 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 DDX23Q9BUQ8 820 aaKnown RBP0.51□□□□□ -2.33
VPS35-212ENST00000640313 HERC2P3Q9BVR0 1158 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 KATNAL1Q9BW62 490 aa0.51□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms