RNA–Protein interactions for RNA: ENST00000629036.2

DDX41-219, Transcript of DEAD-box helicase 41, humanhuman

TSL 4 BASIC

Gene DDX41, Length 606 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-219ENST00000629036 DKK3Q9UBP4 350 aa11.25□□□□□ -0.61
DDX41-219ENST00000629036 TRIM10Q9UDY6 481 aa11.25□□□□□ -0.61
DDX41-219ENST00000629036 SUSD2Q9UGT4 822 aa11.25□□□□□ -0.61
DDX41-219ENST00000629036 ITM2BQ9Y287 266 aa11.25□□□□□ -0.61
DDX41-219ENST00000629036 FADS3Q9Y5Q0 445 aa11.25□□□□□ -0.61
DDX41-219ENST00000629036 ALG6Q9Y672 507 aa11.25□□□□□ -0.61
DDX41-219ENST00000629036 FLNBO75369 2602 aaKnown RBP11.25□□□□□ -0.61
DDX41-219ENST00000629036 ZNF106Q9H2Y7 1883 aaKnown RBP11.25□□□□□ -0.61
DDX41-219ENST00000629036 COL27A1Q8IZC6 1860 aaPredicted RBP11.24□□□□□ -0.61
DDX41-219ENST00000629036 FREM2Q5SZK8 3169 aa11.24□□□□□ -0.61
DDX41-219ENST00000629036 GRID2IPA4D2P6 1211 aa11.24□□□□□ -0.61
DDX41-219ENST00000629036 FAM47DPA6NHR8 397 aa11.24□□□□□ -0.61
DDX41-219ENST00000629036 C16orf96A6NNT2 1141 aa11.24□□□□□ -0.61
DDX41-219ENST00000629036 KRIT1O00522 736 aa11.24□□□□□ -0.61
DDX41-219ENST00000629036 TRAFD1O14545 582 aaPredicted RBP11.24□□□□□ -0.61
DDX41-219ENST00000629036 ARHGAP33O14559 1287 aa11.24□□□□□ -0.61
DDX41-219ENST00000629036 PSTPIP1O43586 416 aa11.24□□□□□ -0.61
DDX41-219ENST00000629036 POP4O95707 220 aaKnown RBP11.24□□□□□ -0.61
DDX41-219ENST00000629036 CFIP05156 583 aa11.24□□□□□ -0.61
DDX41-219ENST00000629036 GARSP41250 739 aaKnown RBP11.24□□□□□ -0.61
DDX41-219ENST00000629036 CDKN2BP42772 138 aa11.24□□□□□ -0.61
DDX41-219ENST00000629036 SSR1P43307 286 aaKnown RBP11.24□□□□□ -0.61
DDX41-219ENST00000629036 RECQLP46063 649 aaPredicted RBP11.24□□□□□ -0.61
DDX41-219ENST00000629036 GRIA4P48058 902 aa11.24□□□□□ -0.61
DDX41-219ENST00000629036 NOVA1P51513 510 aaKnown RBP11.24□□□□□ -0.61
DDX41-219ENST00000629036 DNA2P51530 1060 aa11.24□□□□□ -0.61
DDX41-219ENST00000629036 NEK3P51956 506 aa11.24□□□□□ -0.61
DDX41-219ENST00000629036 RFTN1Q14699 578 aaPredicted RBP11.24□□□□□ -0.61
DDX41-219ENST00000629036 LBRQ14739 615 aaKnown RBP11.24□□□□□ -0.61
DDX41-219ENST00000629036 SEL1L3Q68CR1 1132 aa11.24□□□□□ -0.61
DDX41-219ENST00000629036 MFSD7Q6UXD7 560 aa11.24□□□□□ -0.61
DDX41-219ENST00000629036 RABEPKQ7Z6M1 372 aa11.24□□□□□ -0.61
DDX41-219ENST00000629036 RGL4Q8IZJ4 473 aa11.24□□□□□ -0.61
DDX41-219ENST00000629036 KCTD6Q8NC69 237 aa11.24□□□□□ -0.61
DDX41-219ENST00000629036 LRRN4Q8WUT4 740 aa11.24□□□□□ -0.61
DDX41-219ENST00000629036 ZCCHC14Q8WYQ9 949 aaKnown RBP11.24□□□□□ -0.61
DDX41-219ENST00000629036 KLHL32Q96NJ5 620 aa11.24□□□□□ -0.61
DDX41-219ENST00000629036 TSGA13Q96PP4 275 aa11.24□□□□□ -0.61
DDX41-219ENST00000629036 CALN1Q9BXU9 219 aa11.24□□□□□ -0.61
DDX41-219ENST00000629036 OSBPL1AQ9BXW6 950 aa11.24□□□□□ -0.61
DDX41-219ENST00000629036 SP110Q9HB58 689 aa11.24□□□□□ -0.61
DDX41-219ENST00000629036 GPR27Q9NS67 375 aa11.24□□□□□ -0.61
DDX41-219ENST00000629036 DNAAF2Q9NVR5 837 aaKnown RBP11.24□□□□□ -0.61
DDX41-219ENST00000629036 FARP1Q9Y4F1 1045 aaPredicted RBP11.24□□□□□ -0.61
DDX41-219ENST00000629036 ZFC3H1O60293 1989 aaKnown RBP11.24□□□□□ -0.61
DDX41-219ENST00000629036 A0A1B0GVT2 93 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 A0A1W2PQU0 124 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 TTC24A2A3L6 582 aaPredicted RBP11.23□□□□□ -0.61
DDX41-219ENST00000629036 LRRD1A4D1F6 860 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 C4orf47A7E2U8 309 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 RNGTTO60942 597 aaKnown RBP11.23□□□□□ -0.61
DDX41-219ENST00000629036 TIMP2P16035 220 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 GM2AP17900 193 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 ITIH2P19823 946 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 SERPINB6P35237 376 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 CTSKP43235 329 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 CSNK1EP49674 416 aaKnown RBP11.23□□□□□ -0.61
DDX41-219ENST00000629036 AFF3P51826 1226 aaKnown RBP11.23□□□□□ -0.61
DDX41-219ENST00000629036 RACK1P63244 317 aaKnown RBP11.23□□□□□ -0.61
DDX41-219ENST00000629036 NSUN2Q08J23 767 aaKnown RBP eCLIP11.23□□□□□ -0.61
DDX41-219ENST00000629036 SFSWAPQ12872 951 aaKnown RBP11.23□□□□□ -0.61
DDX41-219ENST00000629036 SPA17Q15506 151 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 KIF19Q2TAC6 998 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 LRRC73Q5JTD7 316 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 NEK5Q6P3R8 708 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 GDPD4Q6W3E5 623 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 PIP4P1Q86T03 277 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 SRLQ86TD4 932 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 HORMAD1Q86X24 394 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 ZNF354CQ86Y25 554 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 RHOT1Q8IXI2 618 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 KATNAL2Q8IYT4 538 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 MINDY1Q8N5J2 469 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 ATPAF2Q8N5M1 289 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 SNX19Q92543 992 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 HDAC11Q96DB2 347 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 PPP1R16AQ96I34 528 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 TUBGCP5Q96RT8 1024 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 KLF6Q99612 283 aaPredicted RBP11.23□□□□□ -0.61
DDX41-219ENST00000629036 NUSAP1Q9BXS6 441 aaKnown RBP11.23□□□□□ -0.61
DDX41-219ENST00000629036 MIR1-1HGQ9H1L0 117 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 IL21RQ9HBE5 538 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 TMEM9BQ9NQ34 198 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 CA5BQ9Y2D0 317 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 FNDC3AQ9Y2H6 1198 aaKnown RBP11.23□□□□□ -0.61
DDX41-219ENST00000629036 IGSF10Q6WRI0 2623 aa11.23□□□□□ -0.61
DDX41-219ENST00000629036 TBC1D3DA0A087WVF3 549 aa11.22□□□□□ -0.61
DDX41-219ENST00000629036 TBC1D3IA0A087WXS9 549 aa11.22□□□□□ -0.61
DDX41-219ENST00000629036 TBC1D3EA0A087X179 549 aa11.22□□□□□ -0.61
DDX41-219ENST00000629036 TBC1D3KA0A087X1G2 549 aa11.22□□□□□ -0.61
DDX41-219ENST00000629036 TBC1D3FA6NER0 549 aaPredicted RBP11.22□□□□□ -0.61
DDX41-219ENST00000629036 UPK3BL1B0FP48 263 aa11.22□□□□□ -0.61
DDX41-219ENST00000629036 TBC1D3LB9A6J9 549 aa11.22□□□□□ -0.61
DDX41-219ENST00000629036 UPK3BL2E5RIL1 263 aa11.22□□□□□ -0.61
DDX41-219ENST00000629036 VILLO15195 856 aa11.22□□□□□ -0.61
DDX41-219ENST00000629036 RAD51BO15315 384 aa11.22□□□□□ -0.61
DDX41-219ENST00000629036 HTRA2O43464 458 aaPredicted RBP11.22□□□□□ -0.61
DDX41-219ENST00000629036 PALMO75781 387 aa11.22□□□□□ -0.61
DDX41-219ENST00000629036 KRT1P04264 644 aa11.22□□□□□ -0.61
DDX41-219ENST00000629036 TBC1D3HP0C7X1 549 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms