RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 SCYL2Q6P3W7 929 aa12.07□□□□□ -0.48
UPF3B-204ENST00000619445 TMC6Q7Z403 805 aa12.07□□□□□ -0.48
UPF3B-204ENST00000619445 FAM72BQ86X60 149 aa12.07□□□□□ -0.48
UPF3B-204ENST00000619445 DNAAF5Q86Y56 855 aa12.07□□□□□ -0.48
UPF3B-204ENST00000619445 ATL2Q8NHH9 583 aa12.07□□□□□ -0.48
UPF3B-204ENST00000619445 SCG3Q8WXD2 468 aaKnown RBP12.07□□□□□ -0.48
UPF3B-204ENST00000619445 KLHL32Q96NJ5 620 aa12.07□□□□□ -0.48
UPF3B-204ENST00000619445 AGPAT1Q99943 283 aa12.07□□□□□ -0.48
UPF3B-204ENST00000619445 SLC13A1Q9BZW2 595 aa12.07□□□□□ -0.48
UPF3B-204ENST00000619445 NDFIP2Q9NV92 336 aa12.07□□□□□ -0.48
UPF3B-204ENST00000619445 SHROOM3Q8TF72 1996 aa12.07□□□□□ -0.48
UPF3B-204ENST00000619445 RASA4BC9J798 803 aa12.06□□□□□ -0.48
UPF3B-204ENST00000619445 EPHB6O15197 1021 aa12.06□□□□□ -0.48
UPF3B-204ENST00000619445 RASA4O43374 803 aa12.06□□□□□ -0.48
UPF3B-204ENST00000619445 BRINP1O60477 761 aa12.06□□□□□ -0.48
UPF3B-204ENST00000619445 TCEA3O75764 348 aa12.06□□□□□ -0.48
UPF3B-204ENST00000619445 MBD3O95983 291 aa12.06□□□□□ -0.48
UPF3B-204ENST00000619445 HTR1BP28222 390 aa12.06□□□□□ -0.48
UPF3B-204ENST00000619445 MLLT3P42568 568 aaPredicted RBP12.06□□□□□ -0.48
UPF3B-204ENST00000619445 ABL2P42684 1182 aa12.06□□□□□ -0.48
UPF3B-204ENST00000619445 LSSP48449 732 aa12.06□□□□□ -0.48
UPF3B-204ENST00000619445 NDST2P52849 883 aa12.06□□□□□ -0.48
UPF3B-204ENST00000619445 PCBP4P57723 403 aaKnown RBP12.06□□□□□ -0.48
UPF3B-204ENST00000619445 ERVPABLB-1P60509 514 aa12.06□□□□□ -0.48
UPF3B-204ENST00000619445 SERINC3Q13530 473 aa12.06□□□□□ -0.48
UPF3B-204ENST00000619445 SOWAHCQ53LP3 525 aaPredicted RBP12.06□□□□□ -0.48
UPF3B-204ENST00000619445 CFAP58Q5T655 872 aa12.06□□□□□ -0.48
UPF3B-204ENST00000619445 ERAP2Q6P179 960 aa12.06□□□□□ -0.48
UPF3B-204ENST00000619445 BRAT1Q6PJG6 821 aa12.06□□□□□ -0.48
UPF3B-204ENST00000619445 IGF2-ASQ6U949 168 aa12.06□□□□□ -0.48
UPF3B-204ENST00000619445 KDM7AQ6ZMT4 941 aa12.06□□□□□ -0.48
UPF3B-204ENST00000619445 MACC1Q6ZN28 852 aa12.06□□□□□ -0.48
UPF3B-204ENST00000619445 FSTL5Q8N475 847 aaPredicted RBP12.06□□□□□ -0.48
UPF3B-204ENST00000619445 ZNF248Q8NDW4 579 aa12.06□□□□□ -0.48
UPF3B-204ENST00000619445 OR6K2Q8NGY2 324 aa12.06□□□□□ -0.48
UPF3B-204ENST00000619445 MAPK15Q8TD08 544 aa12.06□□□□□ -0.48
UPF3B-204ENST00000619445 CENPTQ96BT3 561 aa12.06□□□□□ -0.48
UPF3B-204ENST00000619445 ZNF641Q96N77 438 aaPredicted RBP12.06□□□□□ -0.48
UPF3B-204ENST00000619445 MCEEQ96PE7 176 aa12.06□□□□□ -0.48
UPF3B-204ENST00000619445 TUBGCP5Q96RT8 1024 aa12.06□□□□□ -0.48
UPF3B-204ENST00000619445 PCDHB18PQ96TA0 734 aa12.06□□□□□ -0.48
UPF3B-204ENST00000619445 PARVAQ9NVD7 372 aa12.06□□□□□ -0.48
UPF3B-204ENST00000619445 APOBEC3BQ9UH17 382 aaKnown RBP12.06□□□□□ -0.48
UPF3B-204ENST00000619445 FZD10Q9ULW2 581 aa12.06□□□□□ -0.48
UPF3B-204ENST00000619445 EME2A4GXA9 379 aaPredicted RBP12.05□□□□□ -0.48
UPF3B-204ENST00000619445 CFAP69A5D8W1 941 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 LMO7DNF2Z398 122 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 RNF103O00237 685 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 RAD51BO15315 384 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 CCP110O43303 1012 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 CREB3O43889 395 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 ALPIP09923 528 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 TPI1P60174 286 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 NR0B2Q15466 257 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 BROXQ5VW32 411 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 ACAD10Q6JQN1 1059 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 ESRP1Q6NXG1 681 aaKnown RBP12.05□□□□□ -0.48
UPF3B-204ENST00000619445 LVRNQ6Q4G3 990 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 PHLDB2Q86SQ0 1253 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 PSTKQ8IV42 348 aaKnown RBP12.05□□□□□ -0.48
UPF3B-204ENST00000619445 MCOLN2Q8IZK6 566 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 IFI44Q8TCB0 444 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 LMX1AQ8TE12 382 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 POLR1BQ9H9Y6 1135 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 THSD1Q9NS62 852 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 UBA2Q9UBT2 640 aaPredicted RBP12.05□□□□□ -0.48
UPF3B-204ENST00000619445 RP1P56715 2156 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 BPTFQ12830 3046 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 TEX51A0A1B0GUA7 166 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 TCRBV5S1A1TA0A578 114 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 FAM170AA1A519 330 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 CAPN8A6NHC0 703 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 ARHGAP42A6NI28 874 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 TLX3O43711 291 aaPredicted RBP12.05□□□□□ -0.48
UPF3B-204ENST00000619445 CSO75390 466 aaKnown RBP12.05□□□□□ -0.48
UPF3B-204ENST00000619445 RNF8O76064 485 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 ANXA6P08133 673 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 HOXB3P14651 431 aaPredicted RBP12.05□□□□□ -0.48
UPF3B-204ENST00000619445 TNFAIP3P21580 790 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 NFKBIAP25963 317 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 GKP32189 559 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 CSNK1DP48730 415 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 CLDN6P56747 220 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 POLR2LP62875 67 aaKnown RBP12.05□□□□□ -0.48
UPF3B-204ENST00000619445 PPARDQ03181 441 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 RFTN1Q14699 578 aaPredicted RBP12.05□□□□□ -0.48
UPF3B-204ENST00000619445 LRRC14Q15048 493 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 AGERQ15109 404 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 ELOCQ15369 112 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 TMEM52BQ4KMG9 183 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 FILIP1LQ4L180 1135 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 RAB6CQ53S08 254 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 ZNF542PQ5EBM4 170 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 PRRT3Q5FWE3 981 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 PPP1R15BQ5SWA1 713 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 ATXN7L2Q5T6C5 722 aaPredicted RBP12.05□□□□□ -0.48
UPF3B-204ENST00000619445 TMCO4Q5TGY1 634 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 VPS36Q86VN1 386 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 PHACTR4Q8IZ21 702 aa12.05□□□□□ -0.48
UPF3B-204ENST00000619445 OR6C4Q8NGE1 309 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms