RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 BOLA1Q9Y3E2 137 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 TCAF1Q9Y4C2 921 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 AFG3L2Q9Y4W6 797 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 COL11A1P12107 1806 aaPredicted RBP10.32□□□□□ -0.76
VPS39-214ENST00000614932 ISPDA4D126 451 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 SEMA3DO95025 777 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 MYF6P23409 242 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 SLC18A2Q05940 514 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 SLC13A2Q13183 592 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 MMRN1Q13201 1228 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 NAB1Q13506 487 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 LY6KQ17RY6 165 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 TAS1R3Q7RTX0 852 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 AADATQ8N5Z0 425 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 OR6F1Q8NGZ6 308 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 RTKNQ9BST9 563 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 DHRS4Q9BTZ2 278 aa10.32□□□□□ -0.76
VPS39-214ENST00000614932 ZNF395Q9H8N7 513 aaPredicted RBP10.32□□□□□ -0.76
VPS39-214ENST00000614932 POLR2AP24928 1970 aaKnown RBP10.31□□□□□ -0.76
VPS39-214ENST00000614932 PI4K2BG5E9Z4 385 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 SLITRK5O94991 958 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 STBD1O95210 358 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 DLGAP3O95886 979 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 XRCC1P18887 633 aaPredicted RBP10.31□□□□□ -0.76
VPS39-214ENST00000614932 TNNI1P19237 187 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 L1CAMP32004 1257 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 ABCG1P45844 678 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 ST13P50502 369 aaKnown RBP10.31□□□□□ -0.76
VPS39-214ENST00000614932 OLR1P78380 273 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 TRAP1Q12931 704 aaKnown RBP10.31□□□□□ -0.76
VPS39-214ENST00000614932 BNIP2Q12982 314 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 PEX6Q13608 980 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 NFIL3Q16649 462 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 KIZQ2M2Z5 673 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 TEX44Q53QW1 395 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 SV2AQ7L0J3 742 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 GSTA5Q7RTV2 222 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 PIWIL3Q7Z3Z3 882 aaKnown RBP10.31□□□□□ -0.76
VPS39-214ENST00000614932 CTAGE3PQ8IX95 158 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 CHCHD4Q8N4Q1 142 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 SEPT1Q8WYJ6 367 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 GPRASP2Q96D09 838 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 HDAC11Q96DB2 347 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 TMEM80Q96HE8 168 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 PPP1R16BQ96T49 567 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 SLC13A1Q9BZW2 595 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 SEMA6AQ9H2E6 1030 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 ERVMER34-1Q9H9K5 563 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 FANCFQ9NPI8 374 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 DUS2Q9NX74 493 aaKnown RBP10.31□□□□□ -0.76
VPS39-214ENST00000614932 IPO11Q9UI26 975 aaKnown RBP10.31□□□□□ -0.76
VPS39-214ENST00000614932 GMEB2Q9UKD1 530 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 SNCAIPQ9Y6H5 919 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 SSC5DA1L4H1 1573 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 GAS2O43903 313 aaKnown RBP10.31□□□□□ -0.76
VPS39-214ENST00000614932 SEC14L2O76054 403 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 LYPLA2O95372 231 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 CPNE6O95741 557 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 NDST3O95803 873 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 OLFM2O95897 454 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 MAPTP10636 758 aaKnown RBP10.31□□□□□ -0.76
VPS39-214ENST00000614932 COX4I1P13073 169 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 IMPDH1P20839 514 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 LIG4P49917 911 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 NLRP11P59045 1033 aaKnown RBP10.31□□□□□ -0.76
VPS39-214ENST00000614932 GPC5P78333 572 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 GHRHRQ02643 423 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 TAP1Q03518 808 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 BST2Q10589 180 aaKnown RBP10.31□□□□□ -0.76
VPS39-214ENST00000614932 ILF2Q12905 390 aaKnown RBP10.31□□□□□ -0.76
VPS39-214ENST00000614932 CHI3L2Q15782 390 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 YIF1BQ5BJH7 314 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 SLC9A4Q6AI14 798 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 ABHD15Q6UXT9 468 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 PRR23BQ6ZRT6 265 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 ZNF677Q86XU0 584 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 MAP4K3Q8IVH8 894 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 TMEM130Q8N3G9 435 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 CDC26Q8NHZ8 85 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 DCAKDQ8WVC6 231 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 INTS12Q96CB8 462 aaKnown RBP10.31□□□□□ -0.76
VPS39-214ENST00000614932 CSF3RQ99062 836 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 BEGAINQ9BUH8 593 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 ANKEF1Q9NU02 776 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 NPAP1Q9NZP6 1156 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 COPG2Q9UBF2 871 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 DGKBQ9Y6T7 804 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 DNAH12Q6ZR08 3092 aa10.31□□□□□ -0.76
VPS39-214ENST00000614932 TRPC5OSA6NMA1 111 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 PHGDHO43175 533 aaKnown RBP10.3□□□□□ -0.76
VPS39-214ENST00000614932 EXTL3O43909 919 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 FGF18O76093 207 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 HLA-DRAP01903 254 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 EDN1P05305 212 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 GJB1P08034 283 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 TALDO1P37837 337 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 EMC2Q15006 297 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 STXBP2Q15833 593 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 FAM182AQ5T1J6 154 aa10.3□□□□□ -0.76
VPS39-214ENST00000614932 AGAP6Q5VW22 663 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms