RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 VILLO15195 856 aa19.58■□□□□ 0.72
UPF1-212ENST00000601689 MAFKO60675 156 aa19.58■□□□□ 0.72
UPF1-212ENST00000601689 HNRNPA2B1P22626 353 aaKnown RBP19.58■□□□□ 0.72
UPF1-212ENST00000601689 CCNCP24863 283 aa19.58■□□□□ 0.72
UPF1-212ENST00000601689 MMP13P45452 471 aa19.58■□□□□ 0.72
UPF1-212ENST00000601689 TAS2R38P59533 333 aa19.58■□□□□ 0.72
UPF1-212ENST00000601689 PPP2CBP62714 309 aa19.58■□□□□ 0.72
UPF1-212ENST00000601689 PPP2CAP67775 309 aa19.58■□□□□ 0.72
UPF1-212ENST00000601689 GALNT2Q10471 571 aa19.58■□□□□ 0.72
UPF1-212ENST00000601689 HNRNPDQ14103 355 aaKnown RBP19.58■□□□□ 0.72
UPF1-212ENST00000601689 ARHGAP36Q6ZRI8 547 aa19.58■□□□□ 0.72
UPF1-212ENST00000601689 CCNYQ8ND76 341 aa19.58■□□□□ 0.72
UPF1-212ENST00000601689 CCDC112Q8NEF3 446 aa19.58■□□□□ 0.72
UPF1-212ENST00000601689 C1orf216Q8TAB5 229 aa19.58■□□□□ 0.72
UPF1-212ENST00000601689 CXorf40AQ8TE69 158 aa19.58■□□□□ 0.72
UPF1-212ENST00000601689 SLC6A18Q96N87 628 aa19.58■□□□□ 0.72
UPF1-212ENST00000601689 GAREM1Q9H706 876 aa19.58■□□□□ 0.72
UPF1-212ENST00000601689 FADS3Q9Y5Q0 445 aa19.58■□□□□ 0.72
UPF1-212ENST00000601689 ANKRD36A6QL64 1941 aa19.58■□□□□ 0.72
UPF1-212ENST00000601689 PLXNA2O75051 1894 aa19.57■□□□□ 0.72
UPF1-212ENST00000601689 PPP1R12AO14974 1030 aaPredicted RBP19.57■□□□□ 0.72
UPF1-212ENST00000601689 SLC31A1O15431 190 aa19.57■□□□□ 0.72
UPF1-212ENST00000601689 MFSD11O43934 449 aa19.57■□□□□ 0.72
UPF1-212ENST00000601689 ZRANB2O95218 330 aaKnown RBP eCLIP19.57■□□□□ 0.72
UPF1-212ENST00000601689 KRT10P13645 584 aa19.57■□□□□ 0.72
UPF1-212ENST00000601689 CES1P23141 567 aa19.57■□□□□ 0.72
UPF1-212ENST00000601689 ITKQ08881 620 aa19.57■□□□□ 0.72
UPF1-212ENST00000601689 SLC10A7Q0GE19 358 aa19.57■□□□□ 0.72
UPF1-212ENST00000601689 RAD9BQ6WBX8 426 aa19.57■□□□□ 0.72
UPF1-212ENST00000601689 IQCHQ86VS3 1027 aa19.57■□□□□ 0.72
UPF1-212ENST00000601689 CPNE8Q86YQ8 564 aa19.57■□□□□ 0.72
UPF1-212ENST00000601689 CCDC50Q8IVM0 306 aa19.57■□□□□ 0.72
UPF1-212ENST00000601689 RCOR2Q8IZ40 523 aa19.57■□□□□ 0.72
UPF1-212ENST00000601689 SYCE1Q8N0S2 351 aa19.57■□□□□ 0.72
UPF1-212ENST00000601689 NDUFAF2Q8N183 169 aa19.57■□□□□ 0.72
UPF1-212ENST00000601689 OXR1Q8N573 874 aa19.57■□□□□ 0.72
UPF1-212ENST00000601689 MFSD2AQ8NA29 543 aa19.57■□□□□ 0.72
UPF1-212ENST00000601689 KIAA1524Q8TCG1 905 aa19.57■□□□□ 0.72
UPF1-212ENST00000601689 ANP32BQ92688 251 aaKnown RBP19.57■□□□□ 0.72
UPF1-212ENST00000601689 RNF25Q96BH1 459 aaPredicted RBP19.57■□□□□ 0.72
UPF1-212ENST00000601689 RBM41Q96IZ5 413 aaKnown RBP19.57■□□□□ 0.72
UPF1-212ENST00000601689 FSCN3Q9NQT6 498 aa19.57■□□□□ 0.72
UPF1-212ENST00000601689 GDF3Q9NR23 364 aa19.57■□□□□ 0.72
UPF1-212ENST00000601689 DNAAF2Q9NVR5 837 aaKnown RBP19.57■□□□□ 0.72
UPF1-212ENST00000601689 AMACRQ9UHK6 382 aa19.57■□□□□ 0.72
UPF1-212ENST00000601689 HEY1Q9Y5J3 304 aa19.57■□□□□ 0.72
UPF1-212ENST00000601689 DCDC2BA2VCK2 349 aa19.56■□□□□ 0.72
UPF1-212ENST00000601689 PIGNO95427 931 aa19.56■□□□□ 0.72
UPF1-212ENST00000601689 KCNA4P22459 653 aa19.56■□□□□ 0.72
UPF1-212ENST00000601689 CA4P22748 312 aa19.56■□□□□ 0.72
UPF1-212ENST00000601689 PDK1Q15118 436 aa19.56■□□□□ 0.72
UPF1-212ENST00000601689 TPCN2Q8NHX9 752 aa19.56■□□□□ 0.72
UPF1-212ENST00000601689 HDAC11Q96DB2 347 aa19.56■□□□□ 0.72
UPF1-212ENST00000601689 KLHDC7BQ96G42 594 aa19.56■□□□□ 0.72
UPF1-212ENST00000601689 NUDCD1Q96RS6 583 aa19.56■□□□□ 0.72
UPF1-212ENST00000601689 SLC17A9Q9BYT1 436 aa19.56■□□□□ 0.72
UPF1-212ENST00000601689 TSGA10Q9BZW7 698 aa19.56■□□□□ 0.72
UPF1-212ENST00000601689 POLR1EQ9GZS1 481 aaKnown RBP19.56■□□□□ 0.72
UPF1-212ENST00000601689 BRD8Q9H0E9 1235 aa19.56■□□□□ 0.72
UPF1-212ENST00000601689 HYOU1Q9Y4L1 999 aa19.56■□□□□ 0.72
UPF1-212ENST00000601689 TLR4O00206 839 aa19.55■□□□□ 0.72
UPF1-212ENST00000601689 MATN3O15232 486 aa19.55■□□□□ 0.72
UPF1-212ENST00000601689 YKT6O15498 198 aa19.55■□□□□ 0.72
UPF1-212ENST00000601689 INSIG1O15503 277 aa19.55■□□□□ 0.72
UPF1-212ENST00000601689 PJA2O43164 708 aa19.55■□□□□ 0.72
UPF1-212ENST00000601689 TM7SF2O76062 418 aa19.55■□□□□ 0.72
UPF1-212ENST00000601689 ZNF883P0CG24 379 aa19.55■□□□□ 0.72
UPF1-212ENST00000601689 NR2C2P49116 596 aa19.55■□□□□ 0.72
UPF1-212ENST00000601689 ARRB1P49407 418 aaPredicted RBP19.55■□□□□ 0.72
UPF1-212ENST00000601689 FOXK2Q01167 660 aa19.55■□□□□ 0.72
UPF1-212ENST00000601689 UGP2Q16851 508 aa19.55■□□□□ 0.72
UPF1-212ENST00000601689 KIF19Q2TAC6 998 aa19.55■□□□□ 0.72
UPF1-212ENST00000601689 HLA-BQ31612 363 aa19.55■□□□□ 0.72
UPF1-212ENST00000601689 INAVAQ3KP66 663 aa19.55■□□□□ 0.72
UPF1-212ENST00000601689 TP53INP2Q8IXH6 220 aa19.55■□□□□ 0.72
UPF1-212ENST00000601689 CCDC13Q8IYE1 715 aa19.55■□□□□ 0.72
UPF1-212ENST00000601689 ACRBPQ8NEB7 543 aa19.55■□□□□ 0.72
UPF1-212ENST00000601689 FATE1Q969F0 183 aa19.55■□□□□ 0.72
UPF1-212ENST00000601689 TSGA13Q96PP4 275 aa19.55■□□□□ 0.72
UPF1-212ENST00000601689 TTLL3Q9Y4R7 772 aa19.55■□□□□ 0.72
UPF1-212ENST00000601689 PCDHB9Q9Y5E1 797 aa19.55■□□□□ 0.72
UPF1-212ENST00000601689 CEP250Q9BV73 2442 aa19.55■□□□□ 0.72
UPF1-212ENST00000601689 PCDH15Q96QU1 1955 aa19.55■□□□□ 0.72
UPF1-212ENST00000601689 DOCK9Q9BZ29 2069 aa19.55■□□□□ 0.72
UPF1-212ENST00000601689 LAMA1P25391 3075 aa19.54■□□□□ 0.72
UPF1-212ENST00000601689 CCDC66A2RUB6 948 aa19.54■□□□□ 0.72
UPF1-212ENST00000601689 UPK3BL1B0FP48 263 aa19.54■□□□□ 0.72
UPF1-212ENST00000601689 UPK3BL2E5RIL1 263 aa19.54■□□□□ 0.72
UPF1-212ENST00000601689 SOCS5O75159 536 aa19.54■□□□□ 0.72
UPF1-212ENST00000601689 PAK4O96013 591 aaPredicted RBP19.54■□□□□ 0.72
UPF1-212ENST00000601689 CCT8P50990 548 aa19.54■□□□□ 0.72
UPF1-212ENST00000601689 ZNF284Q2VY69 593 aa19.54■□□□□ 0.72
UPF1-212ENST00000601689 TFDP3Q5H9I0 405 aa19.54■□□□□ 0.72
UPF1-212ENST00000601689 SLC9A4Q6AI14 798 aa19.54■□□□□ 0.72
UPF1-212ENST00000601689 DCP2Q8IU60 420 aaKnown RBP19.54■□□□□ 0.72
UPF1-212ENST00000601689 CAMK1DQ8IU85 385 aa19.54■□□□□ 0.72
UPF1-212ENST00000601689 KATNAL2Q8IYT4 538 aa19.54■□□□□ 0.72
UPF1-212ENST00000601689 PQLC3Q8N755 202 aa19.54■□□□□ 0.72
UPF1-212ENST00000601689 PDCD6IPQ8WUM4 868 aaKnown RBP19.54■□□□□ 0.72
UPF1-212ENST00000601689 ASB12Q8WXK4 309 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms