RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 TBC1D23Q9NUY8 699 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 ERAP1Q9NZ08 941 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.51■□□□□ 0.55
UPF1-210ENST00000600689 B4GAT1O43505 415 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 CABYRO75952 493 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 PGK1P00558 417 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 LGALS2P05162 132 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 ZNF182P17025 639 aaPredicted RBP18.51■□□□□ 0.55
UPF1-210ENST00000600689 AARS2Q5JTZ9 985 aaKnown RBP18.51■□□□□ 0.55
UPF1-210ENST00000600689 HFE2Q6ZVN8 426 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 MLPHQ9BV36 600 aaPredicted RBP18.51■□□□□ 0.55
UPF1-210ENST00000600689 KLK14Q9P0G3 267 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 NUP205Q92621 2012 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 NR5A2O00482 541 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 TADA2AO75478 443 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 MT-CYBP00156 380 aaPredicted RBP18.51■□□□□ 0.55
UPF1-210ENST00000600689 NCAM1P13591 858 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 UGT1A1P22309 533 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 UGT1A4P22310 534 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 CES1P23141 567 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 UGT1A3P35503 534 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 UGT1A5P35504 534 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 ADCYAP1R1P41586 468 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 CASP2P42575 452 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 LAMC2Q13753 1193 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 ZC3HC1Q86WB0 502 aaKnown RBP18.51■□□□□ 0.55
UPF1-210ENST00000600689 IPMKQ8NFU5 416 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 AFG1LQ8WV93 481 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 PBXIP1Q96AQ6 731 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 MROH8Q9H579 483 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 TRNAU1APQ9NX07 287 aaKnown RBP18.51■□□□□ 0.55
UPF1-210ENST00000600689 SLC2A6Q9UGQ3 507 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 ADAM28Q9UKQ2 775 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 FZD10Q9ULW2 581 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 USP3Q9Y6I4 520 aa18.51■□□□□ 0.55
UPF1-210ENST00000600689 KCNH1O95259 989 aa18.5■□□□□ 0.55
UPF1-210ENST00000600689 ATICP31939 592 aa18.5■□□□□ 0.55
UPF1-210ENST00000600689 C21orf59P57076 290 aa18.5■□□□□ 0.55
UPF1-210ENST00000600689 INCA1Q0VD86 236 aa18.5■□□□□ 0.55
UPF1-210ENST00000600689 USP41Q3LFD5 358 aa18.5■□□□□ 0.55
UPF1-210ENST00000600689 TSTD2Q5T7W7 516 aa18.5■□□□□ 0.55
UPF1-210ENST00000600689 TAPT1Q6NXT6 567 aa18.5■□□□□ 0.55
UPF1-210ENST00000600689 GPR180Q86V85 440 aa18.5■□□□□ 0.55
UPF1-210ENST00000600689 CNTD1Q8N815 330 aa18.5■□□□□ 0.55
UPF1-210ENST00000600689 SLC7A14Q8TBB6 771 aa18.5■□□□□ 0.55
UPF1-210ENST00000600689 EFHD1Q9BUP0 239 aa18.5■□□□□ 0.55
UPF1-210ENST00000600689 UNC93B1Q9H1C4 597 aa18.5■□□□□ 0.55
UPF1-210ENST00000600689 OSBPL2Q9H1P3 480 aa18.5■□□□□ 0.55
UPF1-210ENST00000600689 SPAG4Q9NPE6 437 aa18.5■□□□□ 0.55
UPF1-210ENST00000600689 SNTG2Q9NY99 539 aa18.5■□□□□ 0.55
UPF1-210ENST00000600689 TRIM43BA6NCK2 446 aa18.5■□□□□ 0.55
UPF1-210ENST00000600689 COQ9O75208 318 aa18.5■□□□□ 0.55
UPF1-210ENST00000600689 SRP72O76094 671 aaKnown RBP18.5■□□□□ 0.55
UPF1-210ENST00000600689 CDH13P55290 713 aa18.5■□□□□ 0.55
UPF1-210ENST00000600689 NAB1Q13506 487 aa18.5■□□□□ 0.55
UPF1-210ENST00000600689 ZIK1Q3SY52 487 aaPredicted RBP18.5■□□□□ 0.55
UPF1-210ENST00000600689 FBXO48Q5FWF7 155 aa18.5■□□□□ 0.55
UPF1-210ENST00000600689 TMEM135Q86UB9 458 aa18.5■□□□□ 0.55
UPF1-210ENST00000600689 PIGZQ86VD9 579 aa18.5■□□□□ 0.55
UPF1-210ENST00000600689 RYBPQ8N488 228 aaPredicted RBP18.5■□□□□ 0.55
UPF1-210ENST00000600689 CPSF7Q8N684 471 aaKnown RBP18.5■□□□□ 0.55
UPF1-210ENST00000600689 MAML3Q96JK9 1138 aa18.5■□□□□ 0.55
UPF1-210ENST00000600689 ZMAT2Q96NC0 199 aaKnown RBP18.5■□□□□ 0.55
UPF1-210ENST00000600689 UPF3AQ9H1J1 476 aaKnown RBP18.5■□□□□ 0.55
UPF1-210ENST00000600689 GOLGA2P5Q9HBQ8 144 aa18.5■□□□□ 0.55
UPF1-210ENST00000600689 CROTQ9UKG9 612 aa18.5■□□□□ 0.55
UPF1-210ENST00000600689 MTF2Q9Y483 593 aaPredicted RBP18.5■□□□□ 0.55
UPF1-210ENST00000600689 K7EPI3 171 aa18.49■□□□□ 0.55
UPF1-210ENST00000600689 AP2A1O95782 977 aa18.49■□□□□ 0.55
UPF1-210ENST00000600689 DPYSQ14117 519 aa18.49■□□□□ 0.55
UPF1-210ENST00000600689 MAMDC4Q6UXC1 1216 aa18.49■□□□□ 0.55
UPF1-210ENST00000600689 Q6ZNX1 250 aa18.49■□□□□ 0.55
UPF1-210ENST00000600689 MFSD6LQ8IWD5 586 aa18.49■□□□□ 0.55
UPF1-210ENST00000600689 NPWQ8N729 165 aa18.49■□□□□ 0.55
UPF1-210ENST00000600689 HEXDCQ8WVB3 486 aa18.49■□□□□ 0.55
UPF1-210ENST00000600689 C1QTNF1Q9BXJ1 281 aa18.49■□□□□ 0.55
UPF1-210ENST00000600689 ZNF385DQ9H6B1 395 aa18.49■□□□□ 0.55
UPF1-210ENST00000600689 DSEQ9UL01 958 aa18.49■□□□□ 0.55
UPF1-210ENST00000600689 SLC8A2Q9UPR5 921 aa18.49■□□□□ 0.55
UPF1-210ENST00000600689 COQ6Q9Y2Z9 468 aa18.49■□□□□ 0.55
UPF1-210ENST00000600689 C1orf232A0A0U1RR37 186 aa18.49■□□□□ 0.55
UPF1-210ENST00000600689 FAM95CA0A1B0GW59 222 aa18.49■□□□□ 0.55
UPF1-210ENST00000600689 MTHFD1P11586 935 aaKnown RBP18.49■□□□□ 0.55
UPF1-210ENST00000600689 CD68P34810 354 aaPredicted RBP18.49■□□□□ 0.55
UPF1-210ENST00000600689 MAGEA12P43365 314 aa18.49■□□□□ 0.55
UPF1-210ENST00000600689 SLC12A2P55011 1212 aa18.49■□□□□ 0.55
UPF1-210ENST00000600689 STX5Q13190 355 aa18.49■□□□□ 0.55
UPF1-210ENST00000600689 SLC12A1Q13621 1099 aa18.49■□□□□ 0.55
UPF1-210ENST00000600689 ESRP1Q6NXG1 681 aaKnown RBP18.49■□□□□ 0.55
UPF1-210ENST00000600689 LZTR1Q8N653 840 aa18.49■□□□□ 0.55
UPF1-210ENST00000600689 MTG1Q9BT17 334 aaPredicted RBP18.49■□□□□ 0.55
UPF1-210ENST00000600689 ZNF232Q9UNY5 417 aa18.49■□□□□ 0.55
UPF1-210ENST00000600689 A0A087WXM4 84 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 HACD1B0YJ81 288 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 NCK1P16333 377 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 PTPN9P43378 593 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 TAS2R39P59534 338 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 SFSWAPQ12872 951 aaKnown RBP18.48■□□□□ 0.55
UPF1-210ENST00000600689 FUT11Q495W5 492 aa18.48■□□□□ 0.55
UPF1-210ENST00000600689 NHSL2Q5HYW2 709 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms