RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 COQ6Q9Y2Z9 468 aa17.81■□□□□ 0.44
SHKBP1-223ENST00000600552 U3KQA8 63 aa17.81■□□□□ 0.44
SHKBP1-223ENST00000600552 CHD5Q8TDI0 1954 aa17.8■□□□□ 0.44
SHKBP1-223ENST00000600552 ZSCAN5CA6NGD5 496 aaPredicted RBP17.8■□□□□ 0.44
SHKBP1-223ENST00000600552 LGALS16A8MUM7 142 aa17.8■□□□□ 0.44
SHKBP1-223ENST00000600552 PIGNO95427 931 aa17.8■□□□□ 0.44
SHKBP1-223ENST00000600552 TIMP2P16035 220 aa17.8■□□□□ 0.44
SHKBP1-223ENST00000600552 TGM2P21980 687 aa17.8■□□□□ 0.44
SHKBP1-223ENST00000600552 IGFALSP35858 605 aa17.8■□□□□ 0.44
SHKBP1-223ENST00000600552 CXADRP78310 365 aa17.8■□□□□ 0.44
SHKBP1-223ENST00000600552 PTK2BQ14289 1009 aa17.8■□□□□ 0.44
SHKBP1-223ENST00000600552 KLHL40Q2TBA0 621 aa17.8■□□□□ 0.44
SHKBP1-223ENST00000600552 CDCP2Q5VXM1 449 aa17.8■□□□□ 0.44
SHKBP1-223ENST00000600552 ZCCHC8Q6NZY4 707 aaKnown RBP17.8■□□□□ 0.44
SHKBP1-223ENST00000600552 RD3Q7Z3Z2 195 aa17.8■□□□□ 0.44
SHKBP1-223ENST00000600552 CACTIN-AS1Q8N1I8 211 aa17.8■□□□□ 0.44
SHKBP1-223ENST00000600552 SNIP1Q8TAD8 396 aaKnown RBP17.8■□□□□ 0.44
SHKBP1-223ENST00000600552 CELF6Q96J87 481 aaKnown RBP17.8■□□□□ 0.44
SHKBP1-223ENST00000600552 EPAS1Q99814 870 aa17.8■□□□□ 0.44
SHKBP1-223ENST00000600552 SLC13A1Q9BZW2 595 aa17.8■□□□□ 0.44
SHKBP1-223ENST00000600552 RETREG1Q9H6L5 497 aa17.8■□□□□ 0.44
SHKBP1-223ENST00000600552 CATSPERBQ9H7T0 1116 aa17.8■□□□□ 0.44
SHKBP1-223ENST00000600552 ANO10Q9NW15 660 aa17.8■□□□□ 0.44
SHKBP1-223ENST00000600552 APOBEC3BQ9UH17 382 aaKnown RBP17.8■□□□□ 0.44
SHKBP1-223ENST00000600552 LIMA1Q9UHB6 759 aaKnown RBP17.8■□□□□ 0.44
SHKBP1-223ENST00000600552 FZD10Q9ULW2 581 aa17.8■□□□□ 0.44
SHKBP1-223ENST00000600552 GCATO75600 419 aa17.79■□□□□ 0.44
SHKBP1-223ENST00000600552 PRKCGP05129 697 aa17.79■□□□□ 0.44
SHKBP1-223ENST00000600552 ANXA6P08133 673 aa17.79■□□□□ 0.44
SHKBP1-223ENST00000600552 TNFAIP3P21580 790 aa17.79■□□□□ 0.44
SHKBP1-223ENST00000600552 EIF4A3P38919 411 aaKnown RBP17.79■□□□□ 0.44
SHKBP1-223ENST00000600552 ZNF143P52747 638 aaPredicted RBP17.79■□□□□ 0.44
SHKBP1-223ENST00000600552 PFN3P60673 137 aa17.79■□□□□ 0.44
SHKBP1-223ENST00000600552 CYTH1Q15438 398 aa17.79■□□□□ 0.44
SHKBP1-223ENST00000600552 NR0B2Q15466 257 aa17.79■□□□□ 0.44
SHKBP1-223ENST00000600552 C3orf38Q5JPI3 329 aa17.79■□□□□ 0.44
SHKBP1-223ENST00000600552 CFAP58Q5T655 872 aa17.79■□□□□ 0.44
SHKBP1-223ENST00000600552 MON1BQ7L1V2 547 aa17.79■□□□□ 0.44
SHKBP1-223ENST00000600552 ZSCAN30Q86W11 494 aa17.79■□□□□ 0.44
SHKBP1-223ENST00000600552 SPACA3Q8IXA5 215 aa17.79■□□□□ 0.44
SHKBP1-223ENST00000600552 PHACTR4Q8IZ21 702 aa17.79■□□□□ 0.44
SHKBP1-223ENST00000600552 FAM181AQ8N9Y4 354 aa17.79■□□□□ 0.44
SHKBP1-223ENST00000600552 BTN2A2Q8WVV5 523 aa17.79■□□□□ 0.44
SHKBP1-223ENST00000600552 CENPTQ96BT3 561 aa17.79■□□□□ 0.44
SHKBP1-223ENST00000600552 UBL7Q96S82 380 aaPredicted RBP17.79■□□□□ 0.44
SHKBP1-223ENST00000600552 C1QTNF7Q9BXJ2 289 aa17.79■□□□□ 0.44
SHKBP1-223ENST00000600552 PRORYQ9H606 182 aa17.79■□□□□ 0.44
SHKBP1-223ENST00000600552 GPR27Q9NS67 375 aa17.79■□□□□ 0.44
SHKBP1-223ENST00000600552 SIRPGQ9P1W8 387 aa17.79■□□□□ 0.44
SHKBP1-223ENST00000600552 GULP1Q9UBP9 304 aa17.79■□□□□ 0.44
SHKBP1-223ENST00000600552 UBA2Q9UBT2 640 aaPredicted RBP17.79■□□□□ 0.44
SHKBP1-223ENST00000600552 DOLKQ9UPQ8 538 aa17.79■□□□□ 0.44
SHKBP1-223ENST00000600552 CSNK1G3Q9Y6M4 447 aa17.79■□□□□ 0.44
SHKBP1-223ENST00000600552 BPTFQ12830 3046 aa17.78■□□□□ 0.44
SHKBP1-223ENST00000600552 AREL1O15033 823 aa17.78■□□□□ 0.44
SHKBP1-223ENST00000600552 GP1BAP07359 652 aa17.78■□□□□ 0.44
SHKBP1-223ENST00000600552 DESP17661 470 aa17.78■□□□□ 0.44
SHKBP1-223ENST00000600552 TPI1P60174 286 aa17.78■□□□□ 0.44
SHKBP1-223ENST00000600552 MYL5Q02045 173 aa17.78■□□□□ 0.44
SHKBP1-223ENST00000600552 C1QBPQ07021 282 aaKnown RBP17.78■□□□□ 0.44
SHKBP1-223ENST00000600552 SERINC3Q13530 473 aa17.78■□□□□ 0.44
SHKBP1-223ENST00000600552 STX1AQ16623 288 aa17.78■□□□□ 0.44
SHKBP1-223ENST00000600552 HID1Q8IV36 788 aa17.78■□□□□ 0.44
SHKBP1-223ENST00000600552 DENND6BQ8NEG7 585 aa17.78■□□□□ 0.44
SHKBP1-223ENST00000600552 ASB12Q8WXK4 309 aa17.78■□□□□ 0.44
SHKBP1-223ENST00000600552 GLMNQ92990 594 aa17.78■□□□□ 0.44
SHKBP1-223ENST00000600552 CNPY3Q9BT09 278 aa17.78■□□□□ 0.44
SHKBP1-223ENST00000600552 USP29Q9HBJ7 922 aa17.78■□□□□ 0.44
SHKBP1-223ENST00000600552 LHX3Q9UBR4 397 aa17.78■□□□□ 0.44
SHKBP1-223ENST00000600552 PCSK1NQ9UHG2 260 aa17.78■□□□□ 0.44
SHKBP1-223ENST00000600552 DAAM1Q9Y4D1 1078 aa17.78■□□□□ 0.44
SHKBP1-223ENST00000600552 RP1P56715 2156 aa17.77■□□□□ 0.44
SHKBP1-223ENST00000600552 J3KR12 359 aa17.77■□□□□ 0.44
SHKBP1-223ENST00000600552 CASC3O15234 703 aaKnown RBP17.77■□□□□ 0.44
SHKBP1-223ENST00000600552 DAPK3O43293 454 aa17.77■□□□□ 0.44
SHKBP1-223ENST00000600552 ATMINO43313 823 aaPredicted RBP17.77■□□□□ 0.44
SHKBP1-223ENST00000600552 ANP32AP39687 249 aaKnown RBP17.77■□□□□ 0.44
SHKBP1-223ENST00000600552 PCBP4P57723 403 aaKnown RBP17.77■□□□□ 0.44
SHKBP1-223ENST00000600552 YBEYP58557 167 aaPredicted RBP17.77■□□□□ 0.44
SHKBP1-223ENST00000600552 PPARDQ03181 441 aa17.77■□□□□ 0.44
SHKBP1-223ENST00000600552 IRF4Q15306 451 aa17.77■□□□□ 0.44
SHKBP1-223ENST00000600552 INO80DQ53TQ3 878 aaPredicted RBP17.77■□□□□ 0.44
SHKBP1-223ENST00000600552 PERM1Q5SV97 790 aa17.77■□□□□ 0.44
SHKBP1-223ENST00000600552 ACAD10Q6JQN1 1059 aa17.77■□□□□ 0.44
SHKBP1-223ENST00000600552 DNAAF5Q86Y56 855 aa17.77■□□□□ 0.44
SHKBP1-223ENST00000600552 MCOLN2Q8IZK6 566 aa17.77■□□□□ 0.44
SHKBP1-223ENST00000600552 CASKIN2Q8WXE0 1202 aa17.77■□□□□ 0.44
SHKBP1-223ENST00000600552 SLC39A7Q92504 469 aa17.77■□□□□ 0.44
SHKBP1-223ENST00000600552 TSACCQ96A04 125 aaPredicted RBP17.77■□□□□ 0.44
SHKBP1-223ENST00000600552 VOPP1Q96AW1 172 aa17.77■□□□□ 0.44
SHKBP1-223ENST00000600552 ATXN7L3BQ96GX2 97 aa17.77■□□□□ 0.44
SHKBP1-223ENST00000600552 LRRC61Q9BV99 259 aa17.77■□□□□ 0.44
SHKBP1-223ENST00000600552 DHX35Q9H5Z1 703 aaKnown RBP17.77■□□□□ 0.44
SHKBP1-223ENST00000600552 POLR1BQ9H9Y6 1135 aa17.77■□□□□ 0.44
SHKBP1-223ENST00000600552 TAS2R14Q9NYV8 317 aa17.77■□□□□ 0.44
SHKBP1-223ENST00000600552 SALL4Q9UJQ4 1053 aa17.77■□□□□ 0.44
SHKBP1-223ENST00000600552 PNMA8BQ9ULN7 279 aaPredicted RBP17.77■□□□□ 0.44
SHKBP1-223ENST00000600552 SATB2Q9UPW6 733 aa17.77■□□□□ 0.44
SHKBP1-223ENST00000600552 PTPRQQ9UMZ3 2332 aa17.76■□□□□ 0.43
SHKBP1-223ENST00000600552 CXorf51AA0A1B0GTR3 108 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 218.9 ms