RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 PRELID2Q8N945 189 aa13.1□□□□□ -0.31
SCAF1-202ENST00000595242 OR14C36Q8NHC7 312 aa13.1□□□□□ -0.31
SCAF1-202ENST00000595242 FNIP1Q8TF40 1166 aa13.1□□□□□ -0.31
SCAF1-202ENST00000595242 EXTL1Q92935 676 aa13.1□□□□□ -0.31
SCAF1-202ENST00000595242 SLCO2A1Q92959 643 aa13.1□□□□□ -0.31
SCAF1-202ENST00000595242 UCKL1Q9NWZ5 548 aa13.1□□□□□ -0.31
SCAF1-202ENST00000595242 MARCH2Q9P0N8 246 aa13.1□□□□□ -0.31
SCAF1-202ENST00000595242 HMGXB4Q9UGU5 601 aa13.1□□□□□ -0.31
SCAF1-202ENST00000595242 TPX2Q9ULW0 747 aaKnown RBP13.1□□□□□ -0.31
SCAF1-202ENST00000595242 ZFC3H1O60293 1989 aaKnown RBP13.09□□□□□ -0.31
SCAF1-202ENST00000595242 TBC1D3DA0A087WVF3 549 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 TBC1D3IA0A087WXS9 549 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 TBC1D3EA0A087X179 549 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 TBC1D3KA0A087X1G2 549 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 SLC12A8A0AV02 714 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 TBC1D3FA6NER0 549 aaPredicted RBP13.09□□□□□ -0.31
SCAF1-202ENST00000595242 ZSCAN5CA6NGD5 496 aaPredicted RBP13.09□□□□□ -0.31
SCAF1-202ENST00000595242 CDRT15L2A8MXV6 281 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 TBC1D3LB9A6J9 549 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 LATO43561 262 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 FAM87AP0C7U9 286 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 TBC1D3HP0C7X1 549 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 SETSIPP0DME0 302 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 SFTPCP11686 197 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 CD19P15391 556 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 POLR2EP19388 210 aaKnown RBP13.09□□□□□ -0.31
SCAF1-202ENST00000595242 DGKAP23743 735 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 SLC8A1P32418 973 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 PTGIRP43119 386 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 FNTAP49354 379 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 CARSP49589 748 aaKnown RBP13.09□□□□□ -0.31
SCAF1-202ENST00000595242 NDST1P52848 882 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 DRG2P55039 364 aaKnown RBP13.09□□□□□ -0.31
SCAF1-202ENST00000595242 PPP2CBP62714 309 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 PPP2CAP67775 309 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 CBX1P83916 185 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 GABPB1Q06547 395 aaPredicted RBP13.09□□□□□ -0.31
SCAF1-202ENST00000595242 PIGHQ14442 188 aaPredicted RBP13.09□□□□□ -0.31
SCAF1-202ENST00000595242 C2CD6Q53TS8 623 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 TBC1D3GQ6DHY5 549 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 TBC1D3CQ6IPX1 549 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 AADACL2Q6P093 401 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 LCLAT1Q6UWP7 414 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 USP53Q70EK8 1073 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 SND1Q7KZF4 910 aaKnown RBP eCLIP13.09□□□□□ -0.31
SCAF1-202ENST00000595242 TBC1D3Q8IZP1 549 aaPredicted RBP13.09□□□□□ -0.31
SCAF1-202ENST00000595242 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.09□□□□□ -0.31
SCAF1-202ENST00000595242 EXD1Q8NHP7 514 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 TMA16Q96EY4 203 aaKnown RBP13.09□□□□□ -0.31
SCAF1-202ENST00000595242 ATXN7L3BQ96GX2 97 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 MYO19Q96H55 970 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 PRR11Q96HE9 360 aaPredicted RBP13.09□□□□□ -0.31
SCAF1-202ENST00000595242 SEMA3CQ99985 751 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 NT5C1AQ9BXI3 368 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 RAB17Q9H0T7 212 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 LRRC19Q9H756 370 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 PNPLA8Q9NP80 782 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 MED4Q9NPJ6 270 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 FAM114A2Q9NRY5 505 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 WDR70Q9NW82 654 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 TJP2Q9UDY2 1190 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 AMACRQ9UHK6 382 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 CYTH4Q9UIA0 394 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 PCDHGA8Q9Y5G5 932 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 SCN8AQ9UQD0 1980 aa13.09□□□□□ -0.31
SCAF1-202ENST00000595242 SIGLEC16A6NMB1 481 aa13.08□□□□□ -0.32
SCAF1-202ENST00000595242 LZTS3O60299 673 aaPredicted RBP13.08□□□□□ -0.32
SCAF1-202ENST00000595242 ITGB2P05107 769 aa13.08□□□□□ -0.32
SCAF1-202ENST00000595242 GOT1P17174 413 aa13.08□□□□□ -0.32
SCAF1-202ENST00000595242 CD70P32970 193 aa13.08□□□□□ -0.32
SCAF1-202ENST00000595242 PTPN7P35236 360 aa13.08□□□□□ -0.32
SCAF1-202ENST00000595242 GPD2P43304 727 aa13.08□□□□□ -0.32
SCAF1-202ENST00000595242 TNNT3P45378 269 aaPredicted RBP13.08□□□□□ -0.32
SCAF1-202ENST00000595242 INHBCP55103 352 aa13.08□□□□□ -0.32
SCAF1-202ENST00000595242 TAS2R40P59535 323 aa13.08□□□□□ -0.32
SCAF1-202ENST00000595242 MRPS25P82663 173 aaKnown RBP13.08□□□□□ -0.32
SCAF1-202ENST00000595242 OVGP1Q12889 678 aa13.08□□□□□ -0.32
SCAF1-202ENST00000595242 STAT4Q14765 748 aa13.08□□□□□ -0.32
SCAF1-202ENST00000595242 HNRNPA1L2Q32P51 320 aaKnown RBP13.08□□□□□ -0.32
SCAF1-202ENST00000595242 C9orf64Q5T6V5 341 aa13.08□□□□□ -0.32
SCAF1-202ENST00000595242 ARHGAP17Q68EM7 881 aa13.08□□□□□ -0.32
SCAF1-202ENST00000595242 DUPD1Q68J44 220 aa13.08□□□□□ -0.32
SCAF1-202ENST00000595242 FOXR1Q6PIV2 292 aa13.08□□□□□ -0.32
SCAF1-202ENST00000595242 PRPF39Q86UA1 669 aaKnown RBP13.08□□□□□ -0.32
SCAF1-202ENST00000595242 ARL14Q8N4G2 192 aa13.08□□□□□ -0.32
SCAF1-202ENST00000595242 AADATQ8N5Z0 425 aa13.08□□□□□ -0.32
SCAF1-202ENST00000595242 MAPK15Q8TD08 544 aa13.08□□□□□ -0.32
SCAF1-202ENST00000595242 PLD4Q96BZ4 506 aa13.08□□□□□ -0.32
SCAF1-202ENST00000595242 APOLD1Q96LR9 279 aa13.08□□□□□ -0.32
SCAF1-202ENST00000595242 FAM129AQ9BZQ8 928 aa13.08□□□□□ -0.32
SCAF1-202ENST00000595242 MIS12Q9H081 205 aa13.08□□□□□ -0.32
SCAF1-202ENST00000595242 ATXN7L1Q9ULK2 861 aaPredicted RBP13.08□□□□□ -0.32
SCAF1-202ENST00000595242 NFU1Q9UMS0 254 aa13.08□□□□□ -0.32
SCAF1-202ENST00000595242 USP3Q9Y6I4 520 aa13.08□□□□□ -0.32
SCAF1-202ENST00000595242 ITPR2Q14571 2701 aa13.08□□□□□ -0.32
SCAF1-202ENST00000595242 TRPM6Q9BX84 2022 aa13.07□□□□□ -0.32
SCAF1-202ENST00000595242 PMS2P1A4D2B8 440 aa13.07□□□□□ -0.32
SCAF1-202ENST00000595242 H3BQF6 201 aa13.07□□□□□ -0.32
SCAF1-202ENST00000595242 TTI1O43156 1089 aa13.07□□□□□ -0.32
SCAF1-202ENST00000595242 GJB6O95452 261 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms