RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 SLC20A2Q08357 652 aa12.68□□□□□ -0.38
UPF1-203ENST00000594504 CCDC173Q0VFZ6 552 aa12.68□□□□□ -0.38
UPF1-203ENST00000594504 FZD2Q14332 565 aa12.68□□□□□ -0.38
UPF1-203ENST00000594504 HS1BP3Q53T59 392 aa12.68□□□□□ -0.38
UPF1-203ENST00000594504 RWDD4Q6NW29 188 aaKnown RBP12.68□□□□□ -0.38
UPF1-203ENST00000594504 SCYL2Q6P3W7 929 aa12.68□□□□□ -0.38
UPF1-203ENST00000594504 ZNF783Q6ZMS7 281 aa12.68□□□□□ -0.38
UPF1-203ENST00000594504 SLFN11Q7Z7L1 901 aa12.68□□□□□ -0.38
UPF1-203ENST00000594504 NLRP14Q86W24 1093 aa12.68□□□□□ -0.38
UPF1-203ENST00000594504 PCDH20Q8N6Y1 951 aaKnown RBP12.68□□□□□ -0.38
UPF1-203ENST00000594504 CCDC185Q8N715 623 aa12.68□□□□□ -0.38
UPF1-203ENST00000594504 CTNNBL1Q8WYA6 563 aaPredicted RBP12.68□□□□□ -0.38
UPF1-203ENST00000594504 FGF11Q92914 225 aa12.68□□□□□ -0.38
UPF1-203ENST00000594504 ARHGEF2Q92974 986 aaKnown RBP12.68□□□□□ -0.38
UPF1-203ENST00000594504 NAF1Q96HR8 494 aaKnown RBP12.68□□□□□ -0.38
UPF1-203ENST00000594504 PANX2Q96RD6 677 aa12.68□□□□□ -0.38
UPF1-203ENST00000594504 NCAPGQ9BPX3 1015 aa12.68□□□□□ -0.38
UPF1-203ENST00000594504 NUP85Q9BW27 656 aa12.68□□□□□ -0.38
UPF1-203ENST00000594504 TRIM7Q9C029 511 aa12.68□□□□□ -0.38
UPF1-203ENST00000594504 CEP44Q9C0F1 390 aa12.68□□□□□ -0.38
UPF1-203ENST00000594504 PRORYQ9H606 182 aa12.68□□□□□ -0.38
UPF1-203ENST00000594504 SPTLC3Q9NUV7 552 aa12.68□□□□□ -0.38
UPF1-203ENST00000594504 CHD6Q8TD26 2715 aa12.68□□□□□ -0.38
UPF1-203ENST00000594504 EIF4E1BA6NMX2 242 aaKnown RBP12.67□□□□□ -0.38
UPF1-203ENST00000594504 C16orf96A6NNT2 1141 aa12.67□□□□□ -0.38
UPF1-203ENST00000594504 K7ESM1 405 aa12.67□□□□□ -0.38
UPF1-203ENST00000594504 SCAMP1O15126 338 aa12.67□□□□□ -0.38
UPF1-203ENST00000594504 OPA1O60313 960 aa12.67□□□□□ -0.38
UPF1-203ENST00000594504 MPOP05164 745 aa12.67□□□□□ -0.38
UPF1-203ENST00000594504 H2AFZP0C0S5 128 aa12.67□□□□□ -0.38
UPF1-203ENST00000594504 CKMT1AP12532 417 aa12.67□□□□□ -0.38
UPF1-203ENST00000594504 RPS21P63220 83 aaKnown RBP12.67□□□□□ -0.38
UPF1-203ENST00000594504 PDE1CQ14123 709 aaPredicted RBP12.67□□□□□ -0.38
UPF1-203ENST00000594504 EFHC2Q5JST6 749 aa12.67□□□□□ -0.38
UPF1-203ENST00000594504 LRRC73Q5JTD7 316 aa12.67□□□□□ -0.38
UPF1-203ENST00000594504 ATXN7L2Q5T6C5 722 aaPredicted RBP12.67□□□□□ -0.38
UPF1-203ENST00000594504 MANEALQ5VSG8 457 aa12.67□□□□□ -0.38
UPF1-203ENST00000594504 CDCP2Q5VXM1 449 aa12.67□□□□□ -0.38
UPF1-203ENST00000594504 KIAA1161Q6NSJ0 714 aa12.67□□□□□ -0.38
UPF1-203ENST00000594504 H2AFVQ71UI9 128 aa12.67□□□□□ -0.38
UPF1-203ENST00000594504 CACTIN-AS1Q8N1I8 211 aa12.67□□□□□ -0.38
UPF1-203ENST00000594504 PYROXD2Q8N2H3 581 aa12.67□□□□□ -0.38
UPF1-203ENST00000594504 ARHGEF26Q96DR7 871 aa12.67□□□□□ -0.38
UPF1-203ENST00000594504 KLF6Q99612 283 aaPredicted RBP12.67□□□□□ -0.38
UPF1-203ENST00000594504 GPR27Q9NS67 375 aa12.67□□□□□ -0.38
UPF1-203ENST00000594504 NLGN3Q9NZ94 848 aa12.67□□□□□ -0.38
UPF1-203ENST00000594504 IMPACTQ9P2X3 320 aa12.67□□□□□ -0.38
UPF1-203ENST00000594504 IPO11Q9UI26 975 aaKnown RBP12.67□□□□□ -0.38
UPF1-203ENST00000594504 KNTC1P50748 2209 aa12.67□□□□□ -0.38
UPF1-203ENST00000594504 SPTY2D1-AS1A0A0U1RR47 76 aa12.66□□□□□ -0.38
UPF1-203ENST00000594504 KRIT1O00522 736 aa12.66□□□□□ -0.38
UPF1-203ENST00000594504 CASC3O15234 703 aaKnown RBP12.66□□□□□ -0.38
UPF1-203ENST00000594504 RRP8O43159 456 aaKnown RBP12.66□□□□□ -0.38
UPF1-203ENST00000594504 LRIG2O94898 1065 aa12.66□□□□□ -0.38
UPF1-203ENST00000594504 CSF2P04141 144 aa12.66□□□□□ -0.38
UPF1-203ENST00000594504 UGT2B4P06133 528 aa12.66□□□□□ -0.38
UPF1-203ENST00000594504 TMEM253P0C7T8 217 aa12.66□□□□□ -0.38
UPF1-203ENST00000594504 RHOQP17081 205 aa12.66□□□□□ -0.38
UPF1-203ENST00000594504 FECHP22830 423 aa12.66□□□□□ -0.38
UPF1-203ENST00000594504 EIF2B5Q13144 721 aaKnown RBP12.66□□□□□ -0.38
UPF1-203ENST00000594504 SGCGQ13326 291 aa12.66□□□□□ -0.38
UPF1-203ENST00000594504 PIGHQ14442 188 aaPredicted RBP12.66□□□□□ -0.38
UPF1-203ENST00000594504 DEFB133Q30KQ1 61 aa12.66□□□□□ -0.38
UPF1-203ENST00000594504 CRTC1Q6UUV9 634 aa12.66□□□□□ -0.38
UPF1-203ENST00000594504 KYAT3Q6YP21 454 aaKnown RBP12.66□□□□□ -0.38
UPF1-203ENST00000594504 CCDC170Q8IYT3 715 aa12.66□□□□□ -0.38
UPF1-203ENST00000594504 ARFGAP1Q8N6T3 406 aa12.66□□□□□ -0.38
UPF1-203ENST00000594504 NIPA2Q8N8Q9 360 aa12.66□□□□□ -0.38
UPF1-203ENST00000594504 SNIP1Q8TAD8 396 aaKnown RBP12.66□□□□□ -0.38
UPF1-203ENST00000594504 KLHL32Q96NJ5 620 aa12.66□□□□□ -0.38
UPF1-203ENST00000594504 C1QTNF2Q9BXJ5 285 aa12.66□□□□□ -0.38
UPF1-203ENST00000594504 PACSIN1Q9BY11 444 aa12.66□□□□□ -0.38
UPF1-203ENST00000594504 KLC2Q9H0B6 622 aa12.66□□□□□ -0.38
UPF1-203ENST00000594504 TCEAL2Q9H3H9 227 aaPredicted RBP12.66□□□□□ -0.38
UPF1-203ENST00000594504 RETREG1Q9H6L5 497 aa12.66□□□□□ -0.38
UPF1-203ENST00000594504 TMEM248Q9NWD8 314 aa12.66□□□□□ -0.38
UPF1-203ENST00000594504 CTTNBP2NLQ9P2B4 639 aa12.66□□□□□ -0.38
UPF1-203ENST00000594504 UVRAGQ9P2Y5 699 aa12.66□□□□□ -0.38
UPF1-203ENST00000594504 IP6K2Q9UHH9 426 aa12.66□□□□□ -0.38
UPF1-203ENST00000594504 LCMT1Q9UIC8 334 aa12.66□□□□□ -0.38
UPF1-203ENST00000594504 ANAPC7Q9UJX3 599 aa12.66□□□□□ -0.38
UPF1-203ENST00000594504 PNMA8BQ9ULN7 279 aaPredicted RBP12.66□□□□□ -0.38
UPF1-203ENST00000594504 FZD10Q9ULW2 581 aa12.66□□□□□ -0.38
UPF1-203ENST00000594504 NEU3Q9UQ49 428 aa12.66□□□□□ -0.38
UPF1-203ENST00000594504 PKD1L2Q7Z442 2459 aa12.66□□□□□ -0.38
UPF1-203ENST00000594504 CHD5Q8TDI0 1954 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 CPED1A4D0V7 1026 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 NEMP2A6NFY4 417 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 GOLGA6L6A8MZA4 724 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 EIF3CLB5ME19 914 aaKnown RBP12.65□□□□□ -0.38
UPF1-203ENST00000594504 MYO1FO00160 1098 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 NEMP1O14524 444 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 FPGTO14772 594 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 AP1G1O43747 822 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 PRPSAP2O60256 369 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 MMP20O60882 483 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 USP12O75317 370 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 LRCH4O75427 683 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 ZIC2O95409 532 aaPredicted RBP12.65□□□□□ -0.38
UPF1-203ENST00000594504 ALPPL2P10696 532 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms