RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 GTPBP2Q9BX10 602 aaKnown RBP14.73□□□□□ -0.05
VRK3-206ENST00000594090 MAK16Q9BXY0 300 aaKnown RBP14.73□□□□□ -0.05
VRK3-206ENST00000594090 ZFR2Q9UPR6 939 aaKnown RBP14.73□□□□□ -0.05
VRK3-206ENST00000594090 ITM2BQ9Y287 266 aa14.73□□□□□ -0.05
VRK3-206ENST00000594090 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.73□□□□□ -0.05
VRK3-206ENST00000594090 ANKRD36A6QL64 1941 aa14.73□□□□□ -0.05
VRK3-206ENST00000594090 TSPAN11A1L157 253 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 MACROD2A1Z1Q3 448 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 C4orf47A7E2U8 309 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 ZFXP17010 805 aaPredicted RBP14.72□□□□□ -0.05
VRK3-206ENST00000594090 CR2P20023 1033 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 CCNCP24863 283 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 SERPINA4P29622 427 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 ID4P47928 161 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 CSNK1EP49674 416 aaKnown RBP14.72□□□□□ -0.05
VRK3-206ENST00000594090 ATXN3P54252 364 aaPredicted RBP14.72□□□□□ -0.05
VRK3-206ENST00000594090 AP1S1P61966 158 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 BNC1Q01954 994 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 HNRNPDQ14103 355 aaKnown RBP14.72□□□□□ -0.05
VRK3-206ENST00000594090 ZNF284Q2VY69 593 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 TMEM259Q4ZIN3 620 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 LRRC73Q5JTD7 316 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 MARC1Q5VT66 337 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 NAPEPLDQ6IQ20 393 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 KIAA1161Q6NSJ0 714 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 MINDY1Q8N5J2 469 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 TEX26Q8N6G2 289 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 HCAR2Q8TDS4 363 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 FATE1Q969F0 183 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 SERAC1Q96JX3 654 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 NSMCE3Q96MG7 304 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 RTKNQ9BST9 563 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 ZDHHC5Q9C0B5 715 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 SUV39H2Q9H5I1 410 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 ATP13A3Q9H7F0 1226 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 GGT7Q9UJ14 662 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 DMTF1Q9Y222 760 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 HEY1Q9Y5J3 304 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 ADGRG1Q9Y653 693 aa14.72□□□□□ -0.05
VRK3-206ENST00000594090 GON4LQ3T8J9 2241 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 WDR87Q6ZQQ6 2873 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 TP53BP1Q12888 1972 aaPredicted RBP14.71□□□□□ -0.05
VRK3-206ENST00000594090 A0A1B0GVT2 93 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 TTC24A2A3L6 582 aaPredicted RBP14.71□□□□□ -0.05
VRK3-206ENST00000594090 AREL1O15033 823 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 MATN3O15232 486 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 ZRANB2O95218 330 aaKnown RBP eCLIP14.71□□□□□ -0.05
VRK3-206ENST00000594090 TIMP2P16035 220 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 SCNN1BP51168 640 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 MAXP61244 160 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 DYNLT1P63172 113 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 RPS21P63220 83 aaKnown RBP14.71□□□□□ -0.05
VRK3-206ENST00000594090 BCL2L1Q07817 233 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 TFDP2Q14188 446 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 TFDP3Q5H9I0 405 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 CFAP58Q5T655 872 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 SEL1L3Q68CR1 1132 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 BRAT1Q6PJG6 821 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 NPNTQ6UXI9 565 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 ADAT2Q7Z6V5 191 aaKnown RBP14.71□□□□□ -0.05
VRK3-206ENST00000594090 TTC7BQ86TV6 843 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 ZSWIM9Q86XI8 627 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 CAMK1DQ8IU85 385 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 LRRC8AQ8IWT6 810 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 RCOR2Q8IZ40 523 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 OR2I1PQ8NGU4 316 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 EXD1Q8NHP7 514 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 KIAA1524Q8TCG1 905 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 LRRN4Q8WUT4 740 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 KLK6Q92876 244 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 RBM41Q96IZ5 413 aaKnown RBP14.71□□□□□ -0.05
VRK3-206ENST00000594090 OLFM3Q96PB7 478 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 NUDCD1Q96RS6 583 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 NT5MQ9NPB1 228 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 AASDHPPTQ9NRN7 309 aa14.71□□□□□ -0.05
VRK3-206ENST00000594090 hCG_1818297A0A087WSY0 165 aa14.7□□□□□ -0.06
VRK3-206ENST00000594090 CCDC66A2RUB6 948 aa14.7□□□□□ -0.06
VRK3-206ENST00000594090 UPK3BL1B0FP48 263 aa14.7□□□□□ -0.06
VRK3-206ENST00000594090 UPK3BL2E5RIL1 263 aa14.7□□□□□ -0.06
VRK3-206ENST00000594090 NEMP1O14524 444 aa14.7□□□□□ -0.06
VRK3-206ENST00000594090 WNT9AO14904 365 aa14.7□□□□□ -0.06
VRK3-206ENST00000594090 TSPAN6O43657 245 aa14.7□□□□□ -0.06
VRK3-206ENST00000594090 WNT1P04628 370 aa14.7□□□□□ -0.06
VRK3-206ENST00000594090 KRT10P13645 584 aa14.7□□□□□ -0.06
VRK3-206ENST00000594090 PRLRP16471 622 aa14.7□□□□□ -0.06
VRK3-206ENST00000594090 CTNNA2P26232 953 aa14.7□□□□□ -0.06
VRK3-206ENST00000594090 CD38P28907 300 aa14.7□□□□□ -0.06
VRK3-206ENST00000594090 PPIDQ08752 370 aaKnown RBP14.7□□□□□ -0.06
VRK3-206ENST00000594090 PUM1Q14671 1186 aaKnown RBP eCLIP14.7□□□□□ -0.06
VRK3-206ENST00000594090 LLGL1Q15334 1064 aa14.7□□□□□ -0.06
VRK3-206ENST00000594090 UGP2Q16851 508 aa14.7□□□□□ -0.06
VRK3-206ENST00000594090 KAZNQ674X7 775 aa14.7□□□□□ -0.06
VRK3-206ENST00000594090 NT5DC3Q86UY8 548 aa14.7□□□□□ -0.06
VRK3-206ENST00000594090 ZSCAN30Q86W11 494 aa14.7□□□□□ -0.06
VRK3-206ENST00000594090 CCDC50Q8IVM0 306 aa14.7□□□□□ -0.06
VRK3-206ENST00000594090 CCDC13Q8IYE1 715 aa14.7□□□□□ -0.06
VRK3-206ENST00000594090 CCNYQ8ND76 341 aa14.7□□□□□ -0.06
VRK3-206ENST00000594090 ECHDC3Q96DC8 303 aa14.7□□□□□ -0.06
VRK3-206ENST00000594090 FEM1CQ96JP0 617 aa14.7□□□□□ -0.06
VRK3-206ENST00000594090 LGMNQ99538 433 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms