RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	DENND5A	Q6IQ26	1287 aa		15.58	■□□□□ 0.09
DDX39A-209	ENST00000589318	SRRM1	Q8IYB3	904 aa	Known RBP	15.58	■□□□□ 0.09
DDX39A-209	ENST00000589318	UNC5B	Q8IZJ1	945 aa		15.58	■□□□□ 0.09
DDX39A-209	ENST00000589318	ELMOD1	Q8N336	334 aa		15.58	■□□□□ 0.09
DDX39A-209	ENST00000589318	ZNF398	Q8TD17	642 aa		15.58	■□□□□ 0.09
DDX39A-209	ENST00000589318	NDN	Q99608	321 aa		15.58	■□□□□ 0.09
DDX39A-209	ENST00000589318	CENPK	Q9BS16	269 aa		15.58	■□□□□ 0.09
DDX39A-209	ENST00000589318	SLC25A51	Q9H1U9	297 aa		15.58	■□□□□ 0.09
DDX39A-209	ENST00000589318	ATXN3L	Q9H3M9	355 aa		15.58	■□□□□ 0.09
DDX39A-209	ENST00000589318	NT5M	Q9NPB1	228 aa		15.58	■□□□□ 0.09
DDX39A-209	ENST00000589318	ASAH2	Q9NR71	780 aa		15.58	■□□□□ 0.09
DDX39A-209	ENST00000589318	TBC1D30	Q9Y2I9	924 aa		15.58	■□□□□ 0.09
DDX39A-209	ENST00000589318	MMP2	P08253	660 aa		15.58	■□□□□ 0.08
DDX39A-209	ENST00000589318	MYL4	P12829	197 aa		15.58	■□□□□ 0.08
DDX39A-209	ENST00000589318	EPCAM	P16422	314 aa		15.58	■□□□□ 0.08
DDX39A-209	ENST00000589318	GEM	P55040	296 aa		15.58	■□□□□ 0.08
DDX39A-209	ENST00000589318	MGAT5	Q09328	741 aa		15.58	■□□□□ 0.08
DDX39A-209	ENST00000589318	NIPAL4	Q0D2K0	466 aa		15.58	■□□□□ 0.08
DDX39A-209	ENST00000589318	NR1H3	Q13133	447 aa		15.58	■□□□□ 0.08
DDX39A-209	ENST00000589318	MPP2	Q14168	576 aa		15.58	■□□□□ 0.08
DDX39A-209	ENST00000589318	RCN2	Q14257	317 aa		15.58	■□□□□ 0.08
DDX39A-209	ENST00000589318	SHH	Q15465	462 aa		15.58	■□□□□ 0.08
DDX39A-209	ENST00000589318	NAPEPLD	Q6IQ20	393 aa		15.58	■□□□□ 0.08
DDX39A-209	ENST00000589318	CXorf57	Q6NSI4	855 aa	Known RBP	15.58	■□□□□ 0.08
DDX39A-209	ENST00000589318	CASC4	Q6P4E1	433 aa		15.58	■□□□□ 0.08
DDX39A-209	ENST00000589318	RTL10	Q7L3V2	364 aa		15.58	■□□□□ 0.08
DDX39A-209	ENST00000589318	ZNF354C	Q86Y25	554 aa		15.58	■□□□□ 0.08
DDX39A-209	ENST00000589318	CCNJL	Q8IV13	435 aa		15.58	■□□□□ 0.08
DDX39A-209	ENST00000589318	TADA1	Q96BN2	335 aa		15.58	■□□□□ 0.08
DDX39A-209	ENST00000589318	IMP4	Q96G21	291 aa	Known RBP	15.58	■□□□□ 0.08
DDX39A-209	ENST00000589318	MRGPRX2	Q96LB1	330 aa		15.58	■□□□□ 0.08
DDX39A-209	ENST00000589318	NAT9	Q9BTE0	207 aa		15.58	■□□□□ 0.08
DDX39A-209	ENST00000589318	SLC46A2	Q9BY10	475 aa		15.58	■□□□□ 0.08
DDX39A-209	ENST00000589318	ILVBL	A1L0T0	632 aa		15.57	■□□□□ 0.08
DDX39A-209	ENST00000589318	CLASP2	O75122	1294 aa	Known RBP	15.57	■□□□□ 0.08
DDX39A-209	ENST00000589318	MOSPD3	O75425	235 aa		15.57	■□□□□ 0.08
DDX39A-209	ENST00000589318	ZWINT	O95229	277 aa		15.57	■□□□□ 0.08
DDX39A-209	ENST00000589318	C1R	P00736	705 aa		15.57	■□□□□ 0.08
DDX39A-209	ENST00000589318	CKM	P06732	381 aa		15.57	■□□□□ 0.08
DDX39A-209	ENST00000589318	MAX	P61244	160 aa		15.57	■□□□□ 0.08
DDX39A-209	ENST00000589318	CDH17	Q12864	832 aa		15.57	■□□□□ 0.08
DDX39A-209	ENST00000589318	TTC39B	Q5VTQ0	682 aa	Predicted RBP	15.57	■□□□□ 0.08
DDX39A-209	ENST00000589318	KDELC1	Q6UW63	502 aa		15.57	■□□□□ 0.08
DDX39A-209	ENST00000589318	SETD3	Q86TU7	594 aa	Predicted RBP	15.57	■□□□□ 0.08
DDX39A-209	ENST00000589318	DNAAF3	Q8N9W5	541 aa		15.57	■□□□□ 0.08
DDX39A-209	ENST00000589318	IPMK	Q8NFU5	416 aa		15.57	■□□□□ 0.08
DDX39A-209	ENST00000589318	SHKBP1	Q8TBC3	707 aa		15.57	■□□□□ 0.08
DDX39A-209	ENST00000589318	ERP27	Q96DN0	273 aa		15.57	■□□□□ 0.08
DDX39A-209	ENST00000589318	TCEAL4	Q96EI5	215 aa		15.57	■□□□□ 0.08
DDX39A-209	ENST00000589318	FCRL3	Q96P31	734 aa	Predicted RBP	15.57	■□□□□ 0.08
DDX39A-209	ENST00000589318	DDX50	Q9BQ39	737 aa	Known RBP	15.57	■□□□□ 0.08
DDX39A-209	ENST00000589318	TBL1Y	Q9BQ87	522 aa		15.57	■□□□□ 0.08
DDX39A-209	ENST00000589318	KCNK9	Q9NPC2	374 aa		15.57	■□□□□ 0.08
DDX39A-209	ENST00000589318	BFAR	Q9NZS9	450 aa		15.57	■□□□□ 0.08
DDX39A-209	ENST00000589318	CEP290	O15078	2479 aa		15.57	■□□□□ 0.08
DDX39A-209	ENST00000589318		A0A1W2PPM1	405 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	MUSK	O15146	869 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	UGT1A9	O60656	530 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	FAM155B	O75949	473 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	CCDC166	P0CW27	439 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	BRAF	P15056	766 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	GLDC	P23378	1020 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	HOXA9	P31269	272 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	MAGEA10	P43363	369 aa	Predicted RBP	15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	NPY2R	P49146	381 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	SLC34A1	Q06495	639 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	SF3A3	Q12874	501 aa	Known RBP eCLIP	15.56	■□□□□ 0.08	4e-6	■■■■■ 26.8
DDX39A-209	ENST00000589318	LRRC14	Q15048	493 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	TMCO4	Q5TGY1	634 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	CGB2	Q6NT52	195 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	CES3	Q6UWW8	571 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	RANBP10	Q6VN20	620 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	HTR3D	Q70Z44	454 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	LINC00523	Q86TU6	105 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	TMEM135	Q86UB9	458 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	LRRC6	Q86X45	466 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	PPM1N	Q8N819	430 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	ARRDC2	Q8TBH0	407 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	MGARP	Q8TDB4	240 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	TTC17	Q96AE7	1141 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	ZNF599	Q96NL3	588 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	PPP1R2P1	Q96PQ5	205 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	FICD	Q9BVA6	458 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	ACE2	Q9BYF1	805 aa	Predicted RBP	15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	UGT1A7	Q9HAW7	530 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	UGT1A10	Q9HAW8	530 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	UGT1A8	Q9HAW9	530 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	DNMT3B	Q9UBC3	853 aa	Known RBP	15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	YBX2	Q9Y2T7	364 aa	Known RBP	15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	ACTL7A	Q9Y615	435 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	TRAV19	A0A0A6YYK7	116 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	PMPCB	O75439	489 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	TPH1	P17752	444 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	PFKL	P17858	780 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	GM2A	P17900	193 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	TAC1	P20366	129 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	ERVK-21	P61565	698 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	DSC2	Q02487	901 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	ZNF177	Q13360	481 aa	Predicted RBP	15.56	■□□□□ 0.08

Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms