RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 TMCO4Q5TGY1 634 aa24.17■■□□□ 1.46
SHMT1-206ENST00000579558 SRLQ86TD4 932 aa24.17■■□□□ 1.46
SHMT1-206ENST00000579558 SLC35G2Q8TBE7 412 aa24.17■■□□□ 1.46
SHMT1-206ENST00000579558 FAM71BQ8TC56 605 aa24.17■■□□□ 1.46
SHMT1-206ENST00000579558 RBSNQ9H1K0 784 aa24.17■■□□□ 1.46
SHMT1-206ENST00000579558 IGLON5A6NGN9 336 aa24.16■■□□□ 1.46
SHMT1-206ENST00000579558 AREL1O15033 823 aa24.16■■□□□ 1.46
SHMT1-206ENST00000579558 PAK4O96013 591 aaPredicted RBP24.16■■□□□ 1.46
SHMT1-206ENST00000579558 TIMP2P16035 220 aa24.16■■□□□ 1.46
SHMT1-206ENST00000579558 MAN1A1P33908 653 aa24.16■■□□□ 1.46
SHMT1-206ENST00000579558 CSNK1DP48730 415 aa24.16■■□□□ 1.46
SHMT1-206ENST00000579558 ARSEP51690 589 aa24.16■■□□□ 1.46
SHMT1-206ENST00000579558 TAS2R40P59535 323 aa24.16■■□□□ 1.46
SHMT1-206ENST00000579558 SGCGQ13326 291 aa24.16■■□□□ 1.46
SHMT1-206ENST00000579558 MESDQ14696 234 aa24.16■■□□□ 1.46
SHMT1-206ENST00000579558 LBRQ14739 615 aaKnown RBP24.16■■□□□ 1.46
SHMT1-206ENST00000579558 CFAP58Q5T655 872 aa24.16■■□□□ 1.46
SHMT1-206ENST00000579558 GCNT7Q6ZNI0 430 aa24.16■■□□□ 1.46
SHMT1-206ENST00000579558 GATAD2AQ86YP4 633 aa24.16■■□□□ 1.46
SHMT1-206ENST00000579558 KCTD6Q8NC69 237 aa24.16■■□□□ 1.46
SHMT1-206ENST00000579558 BAHD1Q8TBE0 780 aaPredicted RBP24.16■■□□□ 1.46
SHMT1-206ENST00000579558 ZNF599Q96NL3 588 aa24.16■■□□□ 1.46
SHMT1-206ENST00000579558 TUBGCP5Q96RT8 1024 aa24.16■■□□□ 1.46
SHMT1-206ENST00000579558 CDC6Q99741 560 aa24.16■■□□□ 1.46
SHMT1-206ENST00000579558 CALN1Q9BXU9 219 aa24.16■■□□□ 1.46
SHMT1-206ENST00000579558 SUV39H2Q9H5I1 410 aa24.16■■□□□ 1.46
SHMT1-206ENST00000579558 KLHL11Q9NVR0 708 aa24.16■■□□□ 1.46
SHMT1-206ENST00000579558 SEPT3Q9UH03 358 aa24.16■■□□□ 1.46
SHMT1-206ENST00000579558 EPG5Q9HCE0 2579 aa24.16■■□□□ 1.46
SHMT1-206ENST00000579558 ACACBO00763 2458 aa24.16■■□□□ 1.46
SHMT1-206ENST00000579558 ITGAVP06756 1048 aa24.15■■□□□ 1.46
SHMT1-206ENST00000579558 KRT7P08729 469 aa24.15■■□□□ 1.46
SHMT1-206ENST00000579558 IL4RP24394 825 aa24.15■■□□□ 1.46
SHMT1-206ENST00000579558 DPYSL3Q14195 570 aa24.15■■□□□ 1.46
SHMT1-206ENST00000579558 ZFYVE27Q5T4F4 411 aa24.15■■□□□ 1.46
SHMT1-206ENST00000579558 ABI3BPQ7Z7G0 1075 aa24.15■■□□□ 1.46
SHMT1-206ENST00000579558 GLRX5Q86SX6 157 aa24.15■■□□□ 1.46
SHMT1-206ENST00000579558 RHOT2Q8IXI1 618 aa24.15■■□□□ 1.46
SHMT1-206ENST00000579558 ATPAF2Q8N5M1 289 aa24.15■■□□□ 1.46
SHMT1-206ENST00000579558 TC2NQ8N9U0 490 aa24.15■■□□□ 1.46
SHMT1-206ENST00000579558 OR13H1Q8NG92 308 aa24.15■■□□□ 1.46
SHMT1-206ENST00000579558 HCAR2Q8TDS4 363 aa24.15■■□□□ 1.46
SHMT1-206ENST00000579558 ZNF641Q96N77 438 aaPredicted RBP24.15■■□□□ 1.46
SHMT1-206ENST00000579558 C1QTNF2Q9BXJ5 285 aa24.15■■□□□ 1.46
SHMT1-206ENST00000579558 ATP13A3Q9H7F0 1226 aa24.15■■□□□ 1.46
SHMT1-206ENST00000579558 TSPAN11A1L157 253 aa24.14■■□□□ 1.45
SHMT1-206ENST00000579558 A6NNZ2 444 aa24.14■■□□□ 1.45
SHMT1-206ENST00000579558 RAD51BO15315 384 aa24.14■■□□□ 1.45
SHMT1-206ENST00000579558 BUB1BO60566 1050 aaPredicted RBP24.14■■□□□ 1.45
SHMT1-206ENST00000579558 FTH1P19P0C7X4 201 aa24.14■■□□□ 1.45
SHMT1-206ENST00000579558 ITIH2P19823 946 aa24.14■■□□□ 1.45
SHMT1-206ENST00000579558 EPHA8P29322 1005 aaPredicted RBP24.14■■□□□ 1.45
SHMT1-206ENST00000579558 SERPINA4P29622 427 aa24.14■■□□□ 1.45
SHMT1-206ENST00000579558 RXRGP48443 463 aa24.14■■□□□ 1.45
SHMT1-206ENST00000579558 RENBPP51606 427 aa24.14■■□□□ 1.45
SHMT1-206ENST00000579558 SUOXP51687 545 aa24.14■■□□□ 1.45
SHMT1-206ENST00000579558 NSUN2Q08J23 767 aaKnown RBP eCLIP24.14■■□□□ 1.45
SHMT1-206ENST00000579558 SLC10A7Q0GE19 358 aa24.14■■□□□ 1.45
SHMT1-206ENST00000579558 ZNF235Q14590 738 aa24.14■■□□□ 1.45
SHMT1-206ENST00000579558 PDK2Q15119 407 aa24.14■■□□□ 1.45
SHMT1-206ENST00000579558 PTAR1Q7Z6K3 402 aaPredicted RBP24.14■■□□□ 1.45
SHMT1-206ENST00000579558 CAMK1DQ8IU85 385 aa24.14■■□□□ 1.45
SHMT1-206ENST00000579558 FAM174AQ8TBP5 190 aa24.14■■□□□ 1.45
SHMT1-206ENST00000579558 CXorf40AQ8TE69 158 aa24.14■■□□□ 1.45
SHMT1-206ENST00000579558 SAP25Q8TEE9 199 aa24.14■■□□□ 1.45
SHMT1-206ENST00000579558 RFFLQ8WZ73 363 aa24.14■■□□□ 1.45
SHMT1-206ENST00000579558 PSKH2Q96QS6 385 aa24.14■■□□□ 1.45
SHMT1-206ENST00000579558 ZNF670Q9BS34 389 aa24.14■■□□□ 1.45
SHMT1-206ENST00000579558 HS3ST3A1Q9Y663 406 aa24.14■■□□□ 1.45
SHMT1-206ENST00000579558 MUSKO15146 869 aa24.13■■□□□ 1.45
SHMT1-206ENST00000579558 MAFKO60675 156 aa24.13■■□□□ 1.45
SHMT1-206ENST00000579558 TRIM16O95361 564 aa24.13■■□□□ 1.45
SHMT1-206ENST00000579558 TOP3BO95985 862 aaKnown RBP24.13■■□□□ 1.45
SHMT1-206ENST00000579558 ZNF75DP51815 510 aa24.13■■□□□ 1.45
SHMT1-206ENST00000579558 ELP6Q0PNE2 266 aa24.13■■□□□ 1.45
SHMT1-206ENST00000579558 BRAT1Q6PJG6 821 aa24.13■■□□□ 1.45
SHMT1-206ENST00000579558 KYAT3Q6YP21 454 aaKnown RBP24.13■■□□□ 1.45
SHMT1-206ENST00000579558 MAP7D3Q8IWC1 876 aa24.13■■□□□ 1.45
SHMT1-206ENST00000579558 NSMCE1Q8WV22 266 aa24.13■■□□□ 1.45
SHMT1-206ENST00000579558 ASB12Q8WXK4 309 aa24.13■■□□□ 1.45
SHMT1-206ENST00000579558 BMFQ96LC9 184 aa24.13■■□□□ 1.45
SHMT1-206ENST00000579558 CNTNAP3BQ96NU0 1288 aa24.13■■□□□ 1.45
SHMT1-206ENST00000579558 LENG8Q96PV6 779 aaPredicted RBP24.13■■□□□ 1.45
SHMT1-206ENST00000579558 CNTNAP3Q9BZ76 1288 aa24.13■■□□□ 1.45
SHMT1-206ENST00000579558 INTUQ9ULD6 942 aa24.13■■□□□ 1.45
SHMT1-206ENST00000579558 WASF3Q9UPY6 502 aa24.13■■□□□ 1.45
SHMT1-206ENST00000579558 APOBEC2Q9Y235 224 aaKnown RBP24.13■■□□□ 1.45
SHMT1-206ENST00000579558 ANKRD36A6QL64 1941 aa24.13■■□□□ 1.45
SHMT1-206ENST00000579558 POM121BA6NF01 834 aa24.12■■□□□ 1.45
SHMT1-206ENST00000579558 FPGTO14772 594 aa24.12■■□□□ 1.45
SHMT1-206ENST00000579558 MFSD11O43934 449 aa24.12■■□□□ 1.45
SHMT1-206ENST00000579558 MMP20O60882 483 aa24.12■■□□□ 1.45
SHMT1-206ENST00000579558 MTA2O94776 668 aa24.12■■□□□ 1.45
SHMT1-206ENST00000579558 PEX11BO96011 259 aa24.12■■□□□ 1.45
SHMT1-206ENST00000579558 SPINK2P20155 84 aa24.12■■□□□ 1.45
SHMT1-206ENST00000579558 ARHGAP25P42331 645 aa24.12■■□□□ 1.45
SHMT1-206ENST00000579558 SCNN1BP51168 640 aa24.12■■□□□ 1.45
SHMT1-206ENST00000579558 BCL2L1Q07817 233 aa24.12■■□□□ 1.45
SHMT1-206ENST00000579558 BNIP3Q12983 259 aa24.12■■□□□ 1.45
SHMT1-206ENST00000579558 UGP2Q16851 508 aa24.12■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms