RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 HOOK3Q86VS8 718 aa10.36□□□□□ -0.75
SS18-210ENST00000578700 PYROXD2Q8N2H3 581 aa10.36□□□□□ -0.75
SS18-210ENST00000578700 ZCCHC9Q8N567 271 aaKnown RBP10.36□□□□□ -0.75
SS18-210ENST00000578700 ATP6V0D2Q8N8Y2 350 aa10.36□□□□□ -0.75
SS18-210ENST00000578700 RHBDD1Q8TEB9 315 aa10.36□□□□□ -0.75
SS18-210ENST00000578700 TFB1MQ8WVM0 346 aaKnown RBP10.36□□□□□ -0.75
SS18-210ENST00000578700 FOXJ1Q92949 421 aa10.36□□□□□ -0.75
SS18-210ENST00000578700 TOE1Q96GM8 510 aaKnown RBP10.36□□□□□ -0.75
SS18-210ENST00000578700 MRGPRX1Q96LB2 322 aa10.36□□□□□ -0.75
SS18-210ENST00000578700 BBC3Q96PG8 261 aaPredicted RBP10.36□□□□□ -0.75
SS18-210ENST00000578700 CCDC77Q9BR77 488 aa10.36□□□□□ -0.75
SS18-210ENST00000578700 GPR174Q9BXC1 333 aa10.36□□□□□ -0.75
SS18-210ENST00000578700 FRMD8Q9BZ67 464 aaPredicted RBP10.36□□□□□ -0.75
SS18-210ENST00000578700 KLC2Q9H0B6 622 aa10.36□□□□□ -0.75
SS18-210ENST00000578700 PABPC3Q9H361 631 aaKnown RBP10.36□□□□□ -0.75
SS18-210ENST00000578700 GAREM1Q9H706 876 aa10.36□□□□□ -0.75
SS18-210ENST00000578700 CATSPERBQ9H7T0 1116 aa10.36□□□□□ -0.75
SS18-210ENST00000578700 PLK2Q9NYY3 685 aa10.36□□□□□ -0.75
SS18-210ENST00000578700 PLAAQ9Y263 795 aa10.36□□□□□ -0.75
SS18-210ENST00000578700 TLR6Q9Y2C9 796 aa10.36□□□□□ -0.75
SS18-210ENST00000578700 STARD13Q9Y3M8 1113 aa10.36□□□□□ -0.75
SS18-210ENST00000578700 NEU2Q9Y3R4 380 aa10.36□□□□□ -0.75
SS18-210ENST00000578700 A0A1B0GTW7 788 aa10.35□□□□□ -0.75
SS18-210ENST00000578700 E7EVH7 732 aa10.35□□□□□ -0.75
SS18-210ENST00000578700 MTSS1O43312 755 aa10.35□□□□□ -0.75
SS18-210ENST00000578700 EPHB2P29323 1055 aa10.35□□□□□ -0.75
SS18-210ENST00000578700 OAS2P29728 719 aaKnown RBP10.35□□□□□ -0.75
SS18-210ENST00000578700 GGCXP38435 758 aa10.35□□□□□ -0.75
SS18-210ENST00000578700 DGKGP49619 791 aa10.35□□□□□ -0.75
SS18-210ENST00000578700 ARL4CP56559 192 aa10.35□□□□□ -0.75
SS18-210ENST00000578700 BASP1P80723 227 aaKnown RBP10.35□□□□□ -0.75
SS18-210ENST00000578700 EFEMP1Q12805 493 aa10.35□□□□□ -0.75
SS18-210ENST00000578700 PAFAH1B3Q15102 231 aaKnown RBP10.35□□□□□ -0.75
SS18-210ENST00000578700 TRIP4Q15650 581 aaPredicted RBP10.35□□□□□ -0.75
SS18-210ENST00000578700 NCBP2-AS2Q69YL0 99 aa10.35□□□□□ -0.75
SS18-210ENST00000578700 HIBCHQ6NVY1 386 aaPredicted RBP10.35□□□□□ -0.75
SS18-210ENST00000578700 RWDD4Q6NW29 188 aaKnown RBP10.35□□□□□ -0.75
SS18-210ENST00000578700 ARHGEF18Q6ZSZ5 1173 aa10.35□□□□□ -0.75
SS18-210ENST00000578700 UNC45BQ8IWX7 931 aa10.35□□□□□ -0.75
SS18-210ENST00000578700 TSEN2Q8NCE0 465 aaKnown RBP10.35□□□□□ -0.75
SS18-210ENST00000578700 CCNYQ8ND76 341 aa10.35□□□□□ -0.75
SS18-210ENST00000578700 TBC1D31Q96DN5 1066 aa10.35□□□□□ -0.75
SS18-210ENST00000578700 TTC25Q96NG3 672 aa10.35□□□□□ -0.75
SS18-210ENST00000578700 QKIQ96PU8 341 aaKnown RBP eCLIP10.35□□□□□ -0.753e-6■■■■□ 23
SS18-210ENST00000578700 ZDHHC5Q9C0B5 715 aa10.35□□□□□ -0.75
SS18-210ENST00000578700 SIK2Q9H0K1 926 aa10.35□□□□□ -0.75
SS18-210ENST00000578700 STMN4Q9H169 189 aaPredicted RBP10.35□□□□□ -0.75
SS18-210ENST00000578700 NMUR1Q9HB89 426 aa10.35□□□□□ -0.75
SS18-210ENST00000578700 TM7SF3Q9NS93 570 aa10.35□□□□□ -0.75
SS18-210ENST00000578700 ARHGEF38Q9NXL2 777 aa10.35□□□□□ -0.75
SS18-210ENST00000578700 FAM53CQ9NYF3 392 aa10.35□□□□□ -0.75
SS18-210ENST00000578700 PCOLCE2Q9UKZ9 415 aa10.35□□□□□ -0.75
SS18-210ENST00000578700 CFAP46Q8IYW2 2715 aa10.35□□□□□ -0.75
SS18-210ENST00000578700 SHROOM3Q8TF72 1996 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.34□□□□□ -0.75
SS18-210ENST00000578700 FAM149AA5PLN7 773 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 TRABD2BA6NFA1 517 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 TLR5O60602 858 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 PAGE1O75459 146 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 IGLV3-25P01717 112 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 ATXN1LP0C7T5 689 aaKnown RBP10.34□□□□□ -0.75
SS18-210ENST00000578700 ZSCAN5DPP0CG00 497 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 ERCC2P18074 760 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 IVDP26440 423 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 RBL1P28749 1068 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 RPL22P35268 128 aaKnown RBP10.34□□□□□ -0.75
SS18-210ENST00000578700 ATP5C1P36542 298 aaKnown RBP10.34□□□□□ -0.75
SS18-210ENST00000578700 LMAN1P49257 510 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 PGFP49763 221 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 SARNPP82979 210 aaKnown RBP10.34□□□□□ -0.75
SS18-210ENST00000578700 GBE1Q04446 702 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 AP1B1Q10567 949 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 DPYSQ14117 519 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 STARD3Q14849 445 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 CEP85LQ5SZL2 805 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 NUGGCQ68CJ6 796 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 FAM124AQ86V42 546 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 CACUL1Q86Y37 369 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 IQCKQ8N0W5 287 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 PDIK1LQ8N165 341 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 LZTR1Q8N653 840 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 HTR3CQ8WXA8 447 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 SNX19Q92543 992 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 COL26A1Q96A83 441 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 RTP4Q96DX8 246 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 CRELD1Q96HD1 420 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 C1orf74Q96LT6 269 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 DCBLD2Q96PD2 775 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 ZIM3Q96PE6 472 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 GABRG3Q99928 467 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.34□□□□□ -0.75
SS18-210ENST00000578700 WSB2Q9NYS7 404 aaPredicted RBP10.34□□□□□ -0.75
SS18-210ENST00000578700 DTLQ9NZJ0 730 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 MARCH2Q9P0N8 246 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 SFMBT1Q9UHJ3 866 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 XPO7Q9UIA9 1087 aaKnown RBP10.34□□□□□ -0.75
SS18-210ENST00000578700 LSM7Q9UK45 103 aaKnown RBP10.34□□□□□ -0.75
SS18-210ENST00000578700 NUDT5Q9UKK9 219 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 STON1Q9Y6Q2 735 aa10.34□□□□□ -0.75
SS18-210ENST00000578700 KNTC1P50748 2209 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms