RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 NOVA1P51513 510 aaKnown RBP19.71■□□□□ 0.75
SS18-209ENST00000578595 RPS21P63220 83 aaKnown RBP19.71■□□□□ 0.75
SS18-209ENST00000578595 BCL2L1Q07817 233 aa19.71■□□□□ 0.75
SS18-209ENST00000578595 PAFAH1B3Q15102 231 aaKnown RBP19.71■□□□□ 0.75
SS18-209ENST00000578595 HLA-BQ31612 363 aa19.71■□□□□ 0.75
SS18-209ENST00000578595 MARC1Q5VT66 337 aa19.71■□□□□ 0.75
SS18-209ENST00000578595 CAMK1DQ8IU85 385 aa19.71■□□□□ 0.75
SS18-209ENST00000578595 CCDC50Q8IVM0 306 aa19.71■□□□□ 0.75
SS18-209ENST00000578595 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP19.71■□□□□ 0.75
SS18-209ENST00000578595 CCNYQ8ND76 341 aa19.71■□□□□ 0.75
SS18-209ENST00000578595 PDCD6IPQ8WUM4 868 aaKnown RBP19.71■□□□□ 0.75
SS18-209ENST00000578595 CPEB1Q9BZB8 566 aaKnown RBP19.71■□□□□ 0.75
SS18-209ENST00000578595 SUV39H2Q9H5I1 410 aa19.71■□□□□ 0.75
SS18-209ENST00000578595 IL21RQ9HBE5 538 aa19.71■□□□□ 0.75
SS18-209ENST00000578595 SCUBE2Q9NQ36 999 aa19.71■□□□□ 0.75
SS18-209ENST00000578595 HEY1Q9Y5J3 304 aa19.71■□□□□ 0.75
SS18-209ENST00000578595 A0A0A6YYK5 440 aaPredicted RBP19.7■□□□□ 0.74
SS18-209ENST00000578595 TTC24A2A3L6 582 aaPredicted RBP19.7■□□□□ 0.74
SS18-209ENST00000578595 PRAMEF26H0Y7S4 382 aa19.7■□□□□ 0.74
SS18-209ENST00000578595 KCNK3O14649 394 aa19.7■□□□□ 0.74
SS18-209ENST00000578595 WNT9AO14904 365 aa19.7■□□□□ 0.74
SS18-209ENST00000578595 MAFKO60675 156 aa19.7■□□□□ 0.74
SS18-209ENST00000578595 GARSP41250 739 aaKnown RBP19.7■□□□□ 0.74
SS18-209ENST00000578595 MAXP61244 160 aa19.7■□□□□ 0.74
SS18-209ENST00000578595 BNC1Q01954 994 aa19.7■□□□□ 0.74
SS18-209ENST00000578595 GBE1Q04446 702 aa19.7■□□□□ 0.74
SS18-209ENST00000578595 SGCGQ13326 291 aa19.7■□□□□ 0.74
SS18-209ENST00000578595 TCEAL1Q15170 157 aa19.7■□□□□ 0.74
SS18-209ENST00000578595 LRRC38Q5VT99 294 aa19.7■□□□□ 0.74
SS18-209ENST00000578595 TIGD7Q6NT04 549 aaPredicted RBP19.7■□□□□ 0.74
SS18-209ENST00000578595 PSAPL1Q6NUJ1 521 aa19.7■□□□□ 0.74
SS18-209ENST00000578595 DEFB124Q8NES8 71 aa19.7■□□□□ 0.74
SS18-209ENST00000578595 CXorf40AQ8TE69 158 aa19.7■□□□□ 0.74
SS18-209ENST00000578595 RNF157Q96PX1 679 aa19.7■□□□□ 0.74
SS18-209ENST00000578595 TUBGCP5Q96RT8 1024 aa19.7■□□□□ 0.74
SS18-209ENST00000578595 DESI2Q9BSY9 194 aa19.7■□□□□ 0.74
SS18-209ENST00000578595 WRAP53Q9BUR4 548 aaKnown RBP19.7■□□□□ 0.74
SS18-209ENST00000578595 SLC32A1Q9H598 525 aa19.7■□□□□ 0.74
SS18-209ENST00000578595 NT5MQ9NPB1 228 aa19.7■□□□□ 0.74
SS18-209ENST00000578595 ZFR2Q9UPR6 939 aaKnown RBP19.7■□□□□ 0.74
SS18-209ENST00000578595 FNDC3AQ9Y2H6 1198 aaKnown RBP19.7■□□□□ 0.74
SS18-209ENST00000578595 SBDSQ9Y3A5 250 aaKnown RBP eCLIP19.7■□□□□ 0.74
SS18-209ENST00000578595 ALG6Q9Y672 507 aa19.7■□□□□ 0.74
SS18-209ENST00000578595 MUSKO15146 869 aa19.69■□□□□ 0.74
SS18-209ENST00000578595 VILLO15195 856 aa19.69■□□□□ 0.74
SS18-209ENST00000578595 PSTPIP1O43586 416 aa19.69■□□□□ 0.74
SS18-209ENST00000578595 TSPAN6O43657 245 aa19.69■□□□□ 0.74
SS18-209ENST00000578595 AP1G1O43747 822 aa19.69■□□□□ 0.74
SS18-209ENST00000578595 GJB3O75712 270 aa19.69■□□□□ 0.74
SS18-209ENST00000578595 WNT1P04628 370 aa19.69■□□□□ 0.74
SS18-209ENST00000578595 MX2P20592 715 aa19.69■□□□□ 0.74
SS18-209ENST00000578595 HNRNPA2B1P22626 353 aaKnown RBP19.69■□□□□ 0.74
SS18-209ENST00000578595 HSPA9P38646 679 aaKnown RBP19.69■□□□□ 0.74
SS18-209ENST00000578595 VAV2P52735 878 aa19.69■□□□□ 0.74
SS18-209ENST00000578595 HADHBP55084 474 aaKnown RBP19.69■□□□□ 0.74
SS18-209ENST00000578595 AP1S1P61966 158 aa19.69■□□□□ 0.74
SS18-209ENST00000578595 IL9RQ01113 521 aa19.69■□□□□ 0.74
SS18-209ENST00000578595 GALNT2Q10471 571 aa19.69■□□□□ 0.74
SS18-209ENST00000578595 LLGL1Q15334 1064 aa19.69■□□□□ 0.74
SS18-209ENST00000578595 IFI16Q16666 785 aaKnown RBP19.69■□□□□ 0.74
SS18-209ENST00000578595 ZNF284Q2VY69 593 aa19.69■□□□□ 0.74
SS18-209ENST00000578595 KAZNQ674X7 775 aa19.69■□□□□ 0.74
SS18-209ENST00000578595 C11orf63Q6NUN7 778 aa19.69■□□□□ 0.74
SS18-209ENST00000578595 ERMP1Q7Z2K6 904 aa19.69■□□□□ 0.74
SS18-209ENST00000578595 TXLNBQ8N3L3 684 aa19.69■□□□□ 0.74
SS18-209ENST00000578595 PQLC3Q8N755 202 aa19.69■□□□□ 0.74
SS18-209ENST00000578595 LRRN4Q8WUT4 740 aa19.69■□□□□ 0.74
SS18-209ENST00000578595 FAF2Q96CS3 445 aa19.69■□□□□ 0.74
SS18-209ENST00000578595 PSKH2Q96QS6 385 aa19.69■□□□□ 0.74
SS18-209ENST00000578595 SLC17A9Q9BYT1 436 aa19.69■□□□□ 0.74
SS18-209ENST00000578595 GDF3Q9NR23 364 aa19.69■□□□□ 0.74
SS18-209ENST00000578595 TM7SF3Q9NS93 570 aa19.69■□□□□ 0.74
SS18-209ENST00000578595 DNAAF2Q9NVR5 837 aaKnown RBP19.69■□□□□ 0.74
SS18-209ENST00000578595 RCCD1A6NED2 376 aa19.68■□□□□ 0.74
SS18-209ENST00000578595 IGLON5A6NGN9 336 aa19.68■□□□□ 0.74
SS18-209ENST00000578595 UPK3BL1B0FP48 263 aa19.68■□□□□ 0.74
SS18-209ENST00000578595 UPK3BL2E5RIL1 263 aa19.68■□□□□ 0.74
SS18-209ENST00000578595 PRKCGP05129 697 aa19.68■□□□□ 0.74
SS18-209ENST00000578595 CCT8P50990 548 aa19.68■□□□□ 0.74
SS18-209ENST00000578595 GSDMDP57764 484 aa19.68■□□□□ 0.74
SS18-209ENST00000578595 ELP6Q0PNE2 266 aa19.68■□□□□ 0.74
SS18-209ENST00000578595 ERAP2Q6P179 960 aa19.68■□□□□ 0.74
SS18-209ENST00000578595 PTAR1Q7Z6K3 402 aaPredicted RBP19.68■□□□□ 0.74
SS18-209ENST00000578595 LRRC49Q8IUZ0 686 aa19.68■□□□□ 0.74
SS18-209ENST00000578595 TPCN2Q8NHX9 752 aa19.68■□□□□ 0.74
SS18-209ENST00000578595 SETD7Q8WTS6 366 aaKnown RBP19.68■□□□□ 0.74
SS18-209ENST00000578595 ZNF641Q96N77 438 aaPredicted RBP19.68■□□□□ 0.74
SS18-209ENST00000578595 HAUS2Q9NVX0 235 aa19.68■□□□□ 0.74
SS18-209ENST00000578595 DKK3Q9UBP4 350 aa19.68■□□□□ 0.74
SS18-209ENST00000578595 REXO2Q9Y3B8 237 aaKnown RBP19.68■□□□□ 0.74
SS18-209ENST00000578595 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP19.67■□□□□ 0.74
SS18-209ENST00000578595 H0Y8X5 98 aa19.67■□□□□ 0.74
SS18-209ENST00000578595 MAGEC1O60732 1142 aa19.67■□□□□ 0.74
SS18-209ENST00000578595 PAK4O96013 591 aaPredicted RBP19.67■□□□□ 0.74
SS18-209ENST00000578595 TIMP2P16035 220 aa19.67■□□□□ 0.74
SS18-209ENST00000578595 ZFXP17010 805 aaPredicted RBP19.67■□□□□ 0.74
SS18-209ENST00000578595 ITIH2P19823 946 aa19.67■□□□□ 0.74
SS18-209ENST00000578595 CTSKP43235 329 aa19.67■□□□□ 0.74
SS18-209ENST00000578595 CSNK1DP48730 415 aa19.67■□□□□ 0.74
SS18-209ENST00000578595 CLDN2P57739 230 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms