RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 RWDD4Q6NW29 188 aaKnown RBP10.35□□□□□ -0.75
SS18-207ENST00000577636 ARHGEF18Q6ZSZ5 1173 aa10.35□□□□□ -0.75
SS18-207ENST00000577636 UNC45BQ8IWX7 931 aa10.35□□□□□ -0.75
SS18-207ENST00000577636 TSEN2Q8NCE0 465 aaKnown RBP10.35□□□□□ -0.75
SS18-207ENST00000577636 CCNYQ8ND76 341 aa10.35□□□□□ -0.75
SS18-207ENST00000577636 TBC1D31Q96DN5 1066 aa10.35□□□□□ -0.75
SS18-207ENST00000577636 TTC25Q96NG3 672 aa10.35□□□□□ -0.75
SS18-207ENST00000577636 QKIQ96PU8 341 aaKnown RBP eCLIP10.35□□□□□ -0.753e-6■■■■□ 23
SS18-207ENST00000577636 ZDHHC5Q9C0B5 715 aa10.35□□□□□ -0.75
SS18-207ENST00000577636 SIK2Q9H0K1 926 aa10.35□□□□□ -0.75
SS18-207ENST00000577636 STMN4Q9H169 189 aaPredicted RBP10.35□□□□□ -0.75
SS18-207ENST00000577636 NMUR1Q9HB89 426 aa10.35□□□□□ -0.75
SS18-207ENST00000577636 TM7SF3Q9NS93 570 aa10.35□□□□□ -0.75
SS18-207ENST00000577636 ARHGEF38Q9NXL2 777 aa10.35□□□□□ -0.75
SS18-207ENST00000577636 FAM53CQ9NYF3 392 aa10.35□□□□□ -0.75
SS18-207ENST00000577636 PCOLCE2Q9UKZ9 415 aa10.35□□□□□ -0.75
SS18-207ENST00000577636 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.34□□□□□ -0.75
SS18-207ENST00000577636 FAM149AA5PLN7 773 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 TRABD2BA6NFA1 517 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 TLR5O60602 858 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 PAGE1O75459 146 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 IGLV3-25P01717 112 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 ATXN1LP0C7T5 689 aaKnown RBP10.34□□□□□ -0.75
SS18-207ENST00000577636 ZSCAN5DPP0CG00 497 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 ERCC2P18074 760 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 IVDP26440 423 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 RBL1P28749 1068 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 RPL22P35268 128 aaKnown RBP10.34□□□□□ -0.75
SS18-207ENST00000577636 ATP5C1P36542 298 aaKnown RBP10.34□□□□□ -0.75
SS18-207ENST00000577636 LMAN1P49257 510 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 PGFP49763 221 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 SARNPP82979 210 aaKnown RBP10.34□□□□□ -0.75
SS18-207ENST00000577636 GBE1Q04446 702 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 AP1B1Q10567 949 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 DPYSQ14117 519 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 STARD3Q14849 445 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 CEP85LQ5SZL2 805 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 NUGGCQ68CJ6 796 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 FAM124AQ86V42 546 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 CACUL1Q86Y37 369 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 IQCKQ8N0W5 287 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 PDIK1LQ8N165 341 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 LZTR1Q8N653 840 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 HTR3CQ8WXA8 447 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 SNX19Q92543 992 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 COL26A1Q96A83 441 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 RTP4Q96DX8 246 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 CRELD1Q96HD1 420 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 C1orf74Q96LT6 269 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 DCBLD2Q96PD2 775 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 ZIM3Q96PE6 472 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 GABRG3Q99928 467 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.34□□□□□ -0.75
SS18-207ENST00000577636 WSB2Q9NYS7 404 aaPredicted RBP10.34□□□□□ -0.75
SS18-207ENST00000577636 DTLQ9NZJ0 730 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 MARCH2Q9P0N8 246 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 SFMBT1Q9UHJ3 866 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 XPO7Q9UIA9 1087 aaKnown RBP10.34□□□□□ -0.75
SS18-207ENST00000577636 LSM7Q9UK45 103 aaKnown RBP10.34□□□□□ -0.75
SS18-207ENST00000577636 NUDT5Q9UKK9 219 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 STON1Q9Y6Q2 735 aa10.34□□□□□ -0.75
SS18-207ENST00000577636 TNRC6BQ9UPQ9 1833 aaKnown RBP10.34□□□□□ -0.75
SS18-207ENST00000577636 PKD1L2Q7Z442 2459 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 HELZP42694 1942 aaKnown RBP10.33□□□□□ -0.76
SS18-207ENST00000577636 CEP192Q8TEP8 1941 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 LAMA5O15230 3695 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 C5orf60A6NFR6 353 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 KCNU1A8MYU2 1149 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 EIF3HO15372 352 aaKnown RBP eCLIP10.33□□□□□ -0.76
SS18-207ENST00000577636 BCAT2O15382 392 aaPredicted RBP10.33□□□□□ -0.76
SS18-207ENST00000577636 MSI1O43347 362 aaKnown RBP10.33□□□□□ -0.76
SS18-207ENST00000577636 CBFA2T3O75081 653 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 GCATO75600 419 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 NEBLO76041 1014 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 LRIG2O94898 1065 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 CER1O95813 267 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 MOCS2O96007 188 aaPredicted RBP10.33□□□□□ -0.76
SS18-207ENST00000577636 PRB1P04280 392 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 IVLP07476 585 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 ACADMP11310 421 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 ETS1P14921 441 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 PHBP35232 272 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 CBX1P83916 185 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 HIF1AQ16665 826 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 HLA-BQ31612 363 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 FUT11Q495W5 492 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 RNASEH2BQ5TBB1 312 aaKnown RBP10.33□□□□□ -0.76
SS18-207ENST00000577636 HTR3DQ70Z44 454 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 TMPRSS7Q7RTY8 843 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 TMPRSS6Q8IU80 811 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 ZNF276Q8N554 614 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 SIPA1Q96FS4 1042 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 BTN2A3PQ96KV6 586 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 FCRL2Q96LA5 508 aaPredicted RBP10.33□□□□□ -0.76
SS18-207ENST00000577636 RBM15Q96T37 977 aaKnown RBP eCLIP10.33□□□□□ -0.76
SS18-207ENST00000577636 KLF16Q9BXK1 252 aaPredicted RBP10.33□□□□□ -0.76
SS18-207ENST00000577636 PHACTR1Q9C0D0 580 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 CENPHQ9H3R5 247 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 CD248Q9HCU0 757 aa10.33□□□□□ -0.76
SS18-207ENST00000577636 TMPRSS4Q9NRS4 437 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms