RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 DNA2P51530 1060 aa20.86■□□□□ 0.93
VPS53-210ENST00000571456 CCNHP51946 323 aaPredicted RBP20.86■□□□□ 0.93
VPS53-210ENST00000571456 AP1S1P61966 158 aa20.86■□□□□ 0.93
VPS53-210ENST00000571456 RPS14P62263 151 aaKnown RBP20.86■□□□□ 0.93
VPS53-210ENST00000571456 IFI35P80217 286 aaPredicted RBP20.86■□□□□ 0.93
VPS53-210ENST00000571456 KLF1Q13351 362 aaPredicted RBP20.86■□□□□ 0.93
VPS53-210ENST00000571456 ZNF211Q13398 564 aaPredicted RBP20.86■□□□□ 0.93
VPS53-210ENST00000571456 CST6Q15828 149 aa20.86■□□□□ 0.93
VPS53-210ENST00000571456 UAP1L1Q3KQV9 507 aa20.86■□□□□ 0.93
VPS53-210ENST00000571456 DPY19L3Q6ZPD9 716 aa20.86■□□□□ 0.93
VPS53-210ENST00000571456 ARHGAP36Q6ZRI8 547 aa20.86■□□□□ 0.93
VPS53-210ENST00000571456 TP53INP2Q8IXH6 220 aa20.86■□□□□ 0.93
VPS53-210ENST00000571456 HCAR2Q8TDS4 363 aa20.86■□□□□ 0.93
VPS53-210ENST00000571456 TUBGCP5Q96RT8 1024 aa20.86■□□□□ 0.93
VPS53-210ENST00000571456 FAM129BQ96TA1 746 aa20.86■□□□□ 0.93
VPS53-210ENST00000571456 NAP1L3Q99457 506 aaPredicted RBP20.86■□□□□ 0.93
VPS53-210ENST00000571456 ITM2CQ9NQX7 267 aa20.86■□□□□ 0.93
VPS53-210ENST00000571456 NCKAP1Q9Y2A7 1128 aa20.86■□□□□ 0.93
VPS53-210ENST00000571456 CELSR3Q9NYQ7 3312 aa20.86■□□□□ 0.93
VPS53-210ENST00000571456 A0A1W2PQ67 120 aa20.85■□□□□ 0.93
VPS53-210ENST00000571456 CCNB1P14635 433 aa20.85■□□□□ 0.93
VPS53-210ENST00000571456 PRLRP16471 622 aa20.85■□□□□ 0.93
VPS53-210ENST00000571456 GNG11P61952 73 aa20.85■□□□□ 0.93
VPS53-210ENST00000571456 ADCY2Q08462 1091 aa20.85■□□□□ 0.93
VPS53-210ENST00000571456 SLC10A7Q0GE19 358 aa20.85■□□□□ 0.93
VPS53-210ENST00000571456 AP1B1Q10567 949 aa20.85■□□□□ 0.93
VPS53-210ENST00000571456 PRKD1Q15139 912 aaPredicted RBP20.85■□□□□ 0.93
VPS53-210ENST00000571456 MYLK3Q32MK0 819 aa20.85■□□□□ 0.93
VPS53-210ENST00000571456 SLC13A5Q86YT5 568 aaPredicted RBP20.85■□□□□ 0.93
VPS53-210ENST00000571456 CDKL3Q8IVW4 592 aaPredicted RBP20.85■□□□□ 0.93
VPS53-210ENST00000571456 ACTL9Q8TC94 416 aa20.85■□□□□ 0.93
VPS53-210ENST00000571456 MGME1Q9BQP7 344 aa20.85■□□□□ 0.93
VPS53-210ENST00000571456 POLR1EQ9GZS1 481 aaKnown RBP20.85■□□□□ 0.93
VPS53-210ENST00000571456 PABPC3Q9H361 631 aaKnown RBP20.85■□□□□ 0.93
VPS53-210ENST00000571456 HOMER3Q9NSC5 361 aa20.85■□□□□ 0.93
VPS53-210ENST00000571456 USP36Q9P275 1121 aaKnown RBP20.85■□□□□ 0.93
VPS53-210ENST00000571456 LHX3Q9UBR4 397 aa20.85■□□□□ 0.93
VPS53-210ENST00000571456 FZD4Q9ULV1 537 aa20.85■□□□□ 0.93
VPS53-210ENST00000571456 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20.84■□□□□ 0.93
VPS53-210ENST00000571456 SLC7A4O43246 635 aa20.84■□□□□ 0.93
VPS53-210ENST00000571456 IL1BP01584 269 aa20.84■□□□□ 0.93
VPS53-210ENST00000571456 TUBB4AP04350 444 aa20.84■□□□□ 0.93
VPS53-210ENST00000571456 CAPNS1P04632 268 aa20.84■□□□□ 0.93
VPS53-210ENST00000571456 VAV1P15498 845 aa20.84■□□□□ 0.93
VPS53-210ENST00000571456 PECAM1P16284 738 aaPredicted RBP20.84■□□□□ 0.93
VPS53-210ENST00000571456 TCP1P17987 556 aaKnown RBP20.84■□□□□ 0.93
VPS53-210ENST00000571456 SLC8A1P32418 973 aa20.84■□□□□ 0.93
VPS53-210ENST00000571456 SLC45A4Q5BKX6 768 aa20.84■□□□□ 0.93
VPS53-210ENST00000571456 ALG1LQ6GMV1 187 aa20.84■□□□□ 0.93
VPS53-210ENST00000571456 KIAA1324Q6UXG2 1013 aaKnown RBP20.84■□□□□ 0.93
VPS53-210ENST00000571456 SLC36A4Q6YBV0 504 aa20.84■□□□□ 0.93
VPS53-210ENST00000571456 MMAAQ8IVH4 418 aaKnown RBP20.84■□□□□ 0.93
VPS53-210ENST00000571456 RYBPQ8N488 228 aaPredicted RBP20.84■□□□□ 0.93
VPS53-210ENST00000571456 PIP4K2CQ8TBX8 421 aa20.84■□□□□ 0.93
VPS53-210ENST00000571456 ZNF641Q96N77 438 aaPredicted RBP20.84■□□□□ 0.93
VPS53-210ENST00000571456 QKIQ96PU8 341 aaKnown RBP eCLIP20.84■□□□□ 0.93
VPS53-210ENST00000571456 LGMNQ99538 433 aa20.84■□□□□ 0.93
VPS53-210ENST00000571456 IL12RB2Q99665 862 aa20.84■□□□□ 0.93
VPS53-210ENST00000571456 TM6SF2Q9BZW4 377 aa20.84■□□□□ 0.93
VPS53-210ENST00000571456 TNKS2Q9H2K2 1166 aa20.84■□□□□ 0.93
VPS53-210ENST00000571456 MTG2Q9H4K7 406 aa20.84■□□□□ 0.93
VPS53-210ENST00000571456 SLC32A1Q9H598 525 aa20.84■□□□□ 0.93
VPS53-210ENST00000571456 DYRK4Q9NR20 520 aa20.84■□□□□ 0.93
VPS53-210ENST00000571456 POLR3BQ9NW08 1133 aaPredicted RBP20.84■□□□□ 0.93
VPS53-210ENST00000571456 TTC7AQ9ULT0 858 aaPredicted RBP20.84■□□□□ 0.93
VPS53-210ENST00000571456 TPX2Q9ULW0 747 aaKnown RBP20.84■□□□□ 0.93
VPS53-210ENST00000571456 CFAP69A5D8W1 941 aa20.83■□□□□ 0.93
VPS53-210ENST00000571456 BNIP3LO60238 219 aa20.83■□□□□ 0.93
VPS53-210ENST00000571456 P2RY2P41231 377 aa20.83■□□□□ 0.93
VPS53-210ENST00000571456 SUOXP51687 545 aa20.83■□□□□ 0.93
VPS53-210ENST00000571456 OTUD4Q01804 1114 aaKnown RBP20.83■□□□□ 0.93
VPS53-210ENST00000571456 SPDYCQ5MJ68 293 aa20.83■□□□□ 0.93
VPS53-210ENST00000571456 NPNTQ6UXI9 565 aa20.83■□□□□ 0.93
VPS53-210ENST00000571456 LEKR1Q6ZMV7 388 aa20.83■□□□□ 0.93
VPS53-210ENST00000571456 SRLQ86TD4 932 aa20.83■□□□□ 0.93
VPS53-210ENST00000571456 NETO2Q8NC67 525 aa20.83■□□□□ 0.93
VPS53-210ENST00000571456 TSEN2Q8NCE0 465 aaKnown RBP20.83■□□□□ 0.93
VPS53-210ENST00000571456 NUDCD1Q96RS6 583 aa20.83■□□□□ 0.93
VPS53-210ENST00000571456 PCED1AQ9H1Q7 454 aa20.83■□□□□ 0.93
VPS53-210ENST00000571456 ATP13A3Q9H7F0 1226 aa20.83■□□□□ 0.93
VPS53-210ENST00000571456 RBM22Q9NW64 420 aaKnown RBP eCLIP20.83■□□□□ 0.93
VPS53-210ENST00000571456 ACTL7AQ9Y615 435 aa20.83■□□□□ 0.93
VPS53-210ENST00000571456 WASF2Q9Y6W5 498 aa20.83■□□□□ 0.93
VPS53-210ENST00000571456 KRIT1O00522 736 aa20.82■□□□□ 0.92
VPS53-210ENST00000571456 ENC1O14682 589 aa20.82■□□□□ 0.92
VPS53-210ENST00000571456 STK10O94804 968 aaKnown RBP20.82■□□□□ 0.92
VPS53-210ENST00000571456 MAP3K6O95382 1288 aa20.82■□□□□ 0.92
VPS53-210ENST00000571456 CR2P20023 1033 aa20.82■□□□□ 0.92
VPS53-210ENST00000571456 ITGB7P26010 798 aa20.82■□□□□ 0.92
VPS53-210ENST00000571456 SERPINA4P29622 427 aa20.82■□□□□ 0.92
VPS53-210ENST00000571456 TPMTP51580 245 aa20.82■□□□□ 0.92
VPS53-210ENST00000571456 EIF3EP60228 445 aaKnown RBP20.82■□□□□ 0.92
VPS53-210ENST00000571456 IRX4P78413 519 aa20.82■□□□□ 0.92
VPS53-210ENST00000571456 LLGL1Q15334 1064 aa20.82■□□□□ 0.92
VPS53-210ENST00000571456 COL28A1Q2UY09 1125 aa20.82■□□□□ 0.92
VPS53-210ENST00000571456 RASGEF1CQ8N431 466 aa20.82■□□□□ 0.92
VPS53-210ENST00000571456 HTR3CQ8WXA8 447 aa20.82■□□□□ 0.92
VPS53-210ENST00000571456 SPOCK2Q92563 424 aa20.82■□□□□ 0.92
VPS53-210ENST00000571456 FAM131CQ96AQ9 280 aa20.82■□□□□ 0.92
VPS53-210ENST00000571456 NAPGQ99747 312 aaPredicted RBP20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms