RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 RASA4O43374 803 aa18.96■□□□□ 0.63
CLN3-218ENST00000565688 CREB3O43889 395 aa18.96■□□□□ 0.63
CLN3-218ENST00000565688 NEBLO76041 1014 aa18.96■□□□□ 0.63
CLN3-218ENST00000565688 TM7SF2O76062 418 aa18.96■□□□□ 0.63
CLN3-218ENST00000565688 RPL7AP62424 266 aaKnown RBP18.96■□□□□ 0.63
CLN3-218ENST00000565688 YPEL5P62699 121 aa18.96■□□□□ 0.63
CLN3-218ENST00000565688 SERINC3Q13530 473 aa18.96■□□□□ 0.63
CLN3-218ENST00000565688 GRM3Q14832 879 aa18.96■□□□□ 0.63
CLN3-218ENST00000565688 PPP1R15BQ5SWA1 713 aa18.96■□□□□ 0.63
CLN3-218ENST00000565688 HCAR2Q8TDS4 363 aa18.96■□□□□ 0.63
CLN3-218ENST00000565688 CXorf40AQ8TE69 158 aa18.96■□□□□ 0.63
CLN3-218ENST00000565688 HMCESQ96FZ2 354 aa18.96■□□□□ 0.63
CLN3-218ENST00000565688 VCPIP1Q96JH7 1222 aa18.96■□□□□ 0.63
CLN3-218ENST00000565688 CPEB1Q9BZB8 566 aaKnown RBP18.96■□□□□ 0.63
CLN3-218ENST00000565688 SPASTQ9UBP0 616 aa18.96■□□□□ 0.63
CLN3-218ENST00000565688 KLF15Q9UIH9 416 aa18.96■□□□□ 0.63
CLN3-218ENST00000565688 SALL4Q9UJQ4 1053 aa18.96■□□□□ 0.63
CLN3-218ENST00000565688 U3KQA8 63 aa18.96■□□□□ 0.63
CLN3-218ENST00000565688 ITPKBP27987 946 aa18.95■□□□□ 0.62
CLN3-218ENST00000565688 EIF2B5Q13144 721 aaKnown RBP18.95■□□□□ 0.62
CLN3-218ENST00000565688 TBC1D25Q3MII6 688 aa18.95■□□□□ 0.62
CLN3-218ENST00000565688 ACAD10Q6JQN1 1059 aa18.95■□□□□ 0.62
CLN3-218ENST00000565688 VPS36Q86VN1 386 aa18.95■□□□□ 0.62
CLN3-218ENST00000565688 MCOLN2Q8IZK6 566 aa18.95■□□□□ 0.62
CLN3-218ENST00000565688 LSMEM2Q8N112 164 aa18.95■□□□□ 0.62
CLN3-218ENST00000565688 IFI44Q8TCB0 444 aa18.95■□□□□ 0.62
CLN3-218ENST00000565688 LMX1AQ8TE12 382 aa18.95■□□□□ 0.62
CLN3-218ENST00000565688 TBATAQ96M53 351 aa18.95■□□□□ 0.62
CLN3-218ENST00000565688 IL12RB2Q99665 862 aa18.95■□□□□ 0.62
CLN3-218ENST00000565688 NCAPGQ9BPX3 1015 aa18.95■□□□□ 0.62
CLN3-218ENST00000565688 KLC2Q9H0B6 622 aa18.95■□□□□ 0.62
CLN3-218ENST00000565688 CAAP1Q9H8G2 361 aa18.95■□□□□ 0.62
CLN3-218ENST00000565688 MYO6Q9UM54 1294 aa18.95■□□□□ 0.62
CLN3-218ENST00000565688 BPTFQ12830 3046 aa18.95■□□□□ 0.62
CLN3-218ENST00000565688 SMG1Q96Q15 3661 aaKnown RBP18.94■□□□□ 0.62
CLN3-218ENST00000565688 EIF4E1BA6NMX2 242 aaKnown RBP18.94■□□□□ 0.62
CLN3-218ENST00000565688 EIF3CLB5ME19 914 aaKnown RBP18.94■□□□□ 0.62
CLN3-218ENST00000565688 MMP20O60882 483 aa18.94■□□□□ 0.62
CLN3-218ENST00000565688 TIMP2P16035 220 aa18.94■□□□□ 0.62
CLN3-218ENST00000565688 XPAP23025 273 aaPredicted RBP18.94■□□□□ 0.62
CLN3-218ENST00000565688 TPI1P60174 286 aa18.94■□□□□ 0.62
CLN3-218ENST00000565688 ELP6Q0PNE2 266 aa18.94■□□□□ 0.62
CLN3-218ENST00000565688 TPRG1LQ5T0D9 272 aa18.94■□□□□ 0.62
CLN3-218ENST00000565688 APTXQ7Z2E3 356 aaKnown RBP18.94■□□□□ 0.62
CLN3-218ENST00000565688 DNAAF5Q86Y56 855 aa18.94■□□□□ 0.62
CLN3-218ENST00000565688 TPCN2Q8NHX9 752 aa18.94■□□□□ 0.62
CLN3-218ENST00000565688 MAPK15Q8TD08 544 aa18.94■□□□□ 0.62
CLN3-218ENST00000565688 GLMNQ92990 594 aa18.94■□□□□ 0.62
CLN3-218ENST00000565688 GRAMD1AQ96CP6 724 aa18.94■□□□□ 0.62
CLN3-218ENST00000565688 CRELD1Q96HD1 420 aa18.94■□□□□ 0.62
CLN3-218ENST00000565688 UBL7Q96S82 380 aaPredicted RBP18.94■□□□□ 0.62
CLN3-218ENST00000565688 EIF3CQ99613 913 aaKnown RBP18.94■□□□□ 0.62
CLN3-218ENST00000565688 SLC13A1Q9BZW2 595 aa18.94■□□□□ 0.62
CLN3-218ENST00000565688 UBA2Q9UBT2 640 aaPredicted RBP18.94■□□□□ 0.62
CLN3-218ENST00000565688 APOBEC3BQ9UH17 382 aaKnown RBP18.94■□□□□ 0.62
CLN3-218ENST00000565688 PCDHB1Q9Y5F3 818 aa18.94■□□□□ 0.62
CLN3-218ENST00000565688 KALRNO60229 2985 aa18.94■□□□□ 0.62
CLN3-218ENST00000565688 LZTS3O60299 673 aaPredicted RBP18.93■□□□□ 0.62
CLN3-218ENST00000565688 CSO75390 466 aaKnown RBP18.93■□□□□ 0.62
CLN3-218ENST00000565688 MYF5P13349 255 aa18.93■□□□□ 0.62
CLN3-218ENST00000565688 IGFALSP35858 605 aa18.93■□□□□ 0.62
CLN3-218ENST00000565688 RPIAP49247 311 aa18.93■□□□□ 0.62
CLN3-218ENST00000565688 NDST2P52849 883 aa18.93■□□□□ 0.62
CLN3-218ENST00000565688 NCAPHQ15003 741 aa18.93■□□□□ 0.62
CLN3-218ENST00000565688 NR0B2Q15466 257 aa18.93■□□□□ 0.62
CLN3-218ENST00000565688 DEFB133Q30KQ1 61 aa18.93■□□□□ 0.62
CLN3-218ENST00000565688 LRRC73Q5JTD7 316 aa18.93■□□□□ 0.62
CLN3-218ENST00000565688 MACC1Q6ZN28 852 aa18.93■□□□□ 0.62
CLN3-218ENST00000565688 ZNF578Q96N58 590 aaPredicted RBP18.93■□□□□ 0.62
CLN3-218ENST00000565688 PARVAQ9NVD7 372 aa18.93■□□□□ 0.62
CLN3-218ENST00000565688 LHX3Q9UBR4 397 aa18.93■□□□□ 0.62
CLN3-218ENST00000565688 GCN1Q92616 2671 aaKnown RBP18.92■□□□□ 0.62
CLN3-218ENST00000565688 ASXL3Q9C0F0 2248 aa18.92■□□□□ 0.62
CLN3-218ENST00000565688 CPED1A4D0V7 1026 aa18.92■□□□□ 0.62
CLN3-218ENST00000565688 TMEM110-MUSTN1A8MSY1 372 aa18.92■□□□□ 0.62
CLN3-218ENST00000565688 LMO7DNF2Z398 122 aa18.92■□□□□ 0.62
CLN3-218ENST00000565688 USP12O75317 370 aa18.92■□□□□ 0.62
CLN3-218ENST00000565688 DXOO77932 396 aaKnown RBP18.92■□□□□ 0.62
CLN3-218ENST00000565688 TNFAIP3P21580 790 aa18.92■□□□□ 0.62
CLN3-218ENST00000565688 LSSP48449 732 aa18.92■□□□□ 0.62
CLN3-218ENST00000565688 BLKP51451 505 aa18.92■□□□□ 0.62
CLN3-218ENST00000565688 CYTH1Q15438 398 aa18.92■□□□□ 0.62
CLN3-218ENST00000565688 CDKN3Q16667 212 aa18.92■□□□□ 0.62
CLN3-218ENST00000565688 KLHL40Q2TBA0 621 aa18.92■□□□□ 0.62
CLN3-218ENST00000565688 TMEM52BQ4KMG9 183 aa18.92■□□□□ 0.62
CLN3-218ENST00000565688 PRRT3Q5FWE3 981 aa18.92■□□□□ 0.62
CLN3-218ENST00000565688 CFAP58Q5T655 872 aa18.92■□□□□ 0.62
CLN3-218ENST00000565688 IRF2BP2Q7Z5L9 587 aa18.92■□□□□ 0.62
CLN3-218ENST00000565688 PHACTR4Q8IZ21 702 aa18.92■□□□□ 0.62
CLN3-218ENST00000565688 TP53I13Q8NBR0 393 aaPredicted RBP18.92■□□□□ 0.62
CLN3-218ENST00000565688 ZNF641Q96N77 438 aaPredicted RBP18.92■□□□□ 0.62
CLN3-218ENST00000565688 BBC3Q96PG8 261 aaPredicted RBP18.92■□□□□ 0.62
CLN3-218ENST00000565688 WRAP53Q9BUR4 548 aaKnown RBP18.92■□□□□ 0.62
CLN3-218ENST00000565688 BOCQ9BWV1 1114 aa18.92■□□□□ 0.62
CLN3-218ENST00000565688 NAT10Q9H0A0 1025 aaKnown RBP18.92■□□□□ 0.62
CLN3-218ENST00000565688 HSD3B7Q9H2F3 369 aa18.92■□□□□ 0.62
CLN3-218ENST00000565688 SUV39H2Q9H5I1 410 aa18.92■□□□□ 0.62
CLN3-218ENST00000565688 PRORYQ9H606 182 aa18.92■□□□□ 0.62
CLN3-218ENST00000565688 LRRC19Q9H756 370 aa18.92■□□□□ 0.62
CLN3-218ENST00000565688 TSPAN11A1L157 253 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms