RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 TOR1BO14657 336 aa17.33■□□□□ 0.36
CLN3-216ENST00000565316 RASA4O43374 803 aa17.33■□□□□ 0.36
CLN3-216ENST00000565316 IGSF6O95976 241 aa17.33■□□□□ 0.36
CLN3-216ENST00000565316 IGFALSP35858 605 aa17.33■□□□□ 0.36
CLN3-216ENST00000565316 LSSP48449 732 aa17.33■□□□□ 0.36
CLN3-216ENST00000565316 SUOXP51687 545 aa17.33■□□□□ 0.36
CLN3-216ENST00000565316 RPL7AP62424 266 aaKnown RBP17.33■□□□□ 0.36
CLN3-216ENST00000565316 MYL5Q02045 173 aa17.33■□□□□ 0.36
CLN3-216ENST00000565316 PTK2BQ14289 1009 aa17.33■□□□□ 0.36
CLN3-216ENST00000565316 DNAJC24Q6P3W2 148 aa17.33■□□□□ 0.36
CLN3-216ENST00000565316 ANKRD20A12PQ8NF67 263 aa17.33■□□□□ 0.36
CLN3-216ENST00000565316 HCAR2Q8TDS4 363 aa17.33■□□□□ 0.36
CLN3-216ENST00000565316 HMCESQ96FZ2 354 aa17.33■□□□□ 0.36
CLN3-216ENST00000565316 HIC2Q96JB3 615 aa17.33■□□□□ 0.36
CLN3-216ENST00000565316 ZNF578Q96N58 590 aaPredicted RBP17.33■□□□□ 0.36
CLN3-216ENST00000565316 EPAS1Q99814 870 aa17.33■□□□□ 0.36
CLN3-216ENST00000565316 BOCQ9BWV1 1114 aa17.33■□□□□ 0.36
CLN3-216ENST00000565316 SPASTQ9UBP0 616 aa17.33■□□□□ 0.36
CLN3-216ENST00000565316 LHX3Q9UBR4 397 aa17.33■□□□□ 0.36
CLN3-216ENST00000565316 PNMA8BQ9ULN7 279 aaPredicted RBP17.33■□□□□ 0.36
CLN3-216ENST00000565316 EME2A4GXA9 379 aaPredicted RBP17.32■□□□□ 0.36
CLN3-216ENST00000565316 ANKRD62A6NC57 917 aa17.32■□□□□ 0.36
CLN3-216ENST00000565316 MMP20O60882 483 aa17.32■□□□□ 0.36
CLN3-216ENST00000565316 CSO75390 466 aaKnown RBP17.32■□□□□ 0.36
CLN3-216ENST00000565316 GCATO75600 419 aa17.32■□□□□ 0.36
CLN3-216ENST00000565316 ITIH2P19823 946 aa17.32■□□□□ 0.36
CLN3-216ENST00000565316 HTR7P34969 479 aa17.32■□□□□ 0.36
CLN3-216ENST00000565316 RHOAP61586 193 aa17.32■□□□□ 0.36
CLN3-216ENST00000565316 UBXN1Q04323 297 aa17.32■□□□□ 0.36
CLN3-216ENST00000565316 TLE3Q04726 772 aa17.32■□□□□ 0.36
CLN3-216ENST00000565316 CYTH1Q15438 398 aa17.32■□□□□ 0.36
CLN3-216ENST00000565316 TMEM52BQ4KMG9 183 aa17.32■□□□□ 0.36
CLN3-216ENST00000565316 LRRC73Q5JTD7 316 aa17.32■□□□□ 0.36
CLN3-216ENST00000565316 SCYL2Q6P3W7 929 aa17.32■□□□□ 0.36
CLN3-216ENST00000565316 VPS36Q86VN1 386 aa17.32■□□□□ 0.36
CLN3-216ENST00000565316 LSMEM2Q8N112 164 aa17.32■□□□□ 0.36
CLN3-216ENST00000565316 TP53I13Q8NBR0 393 aaPredicted RBP17.32■□□□□ 0.36
CLN3-216ENST00000565316 MAPK15Q8TD08 544 aa17.32■□□□□ 0.36
CLN3-216ENST00000565316 LMX1AQ8TE12 382 aa17.32■□□□□ 0.36
CLN3-216ENST00000565316 PCMTD1Q96MG8 357 aaPredicted RBP17.32■□□□□ 0.36
CLN3-216ENST00000565316 MCEEQ96PE7 176 aa17.32■□□□□ 0.36
CLN3-216ENST00000565316 C1QTNF7Q9BXJ2 289 aa17.32■□□□□ 0.36
CLN3-216ENST00000565316 ABCG4Q9H172 646 aa17.32■□□□□ 0.36
CLN3-216ENST00000565316 HSD3B7Q9H2F3 369 aa17.32■□□□□ 0.36
CLN3-216ENST00000565316 TCEAL2Q9H3H9 227 aaPredicted RBP17.32■□□□□ 0.36
CLN3-216ENST00000565316 CATSPERBQ9H7T0 1116 aa17.32■□□□□ 0.36
CLN3-216ENST00000565316 POLR1BQ9H9Y6 1135 aa17.32■□□□□ 0.36
CLN3-216ENST00000565316 ANO10Q9NW15 660 aa17.32■□□□□ 0.36
CLN3-216ENST00000565316 TSPAN11A1L157 253 aa17.31■□□□□ 0.36
CLN3-216ENST00000565316 LMO7DNF2Z398 122 aa17.31■□□□□ 0.36
CLN3-216ENST00000565316 TK2O00142 265 aa17.31■□□□□ 0.36
CLN3-216ENST00000565316 INSIG1O15503 277 aa17.31■□□□□ 0.36
CLN3-216ENST00000565316 FGF10O15520 208 aaPredicted RBP17.31■□□□□ 0.36
CLN3-216ENST00000565316 USP12O75317 370 aa17.31■□□□□ 0.36
CLN3-216ENST00000565316 TM7SF2O76062 418 aa17.31■□□□□ 0.36
CLN3-216ENST00000565316 MPOP05164 745 aa17.31■□□□□ 0.36
CLN3-216ENST00000565316 TGM2P21980 687 aa17.31■□□□□ 0.36
CLN3-216ENST00000565316 THOP1P52888 689 aa17.31■□□□□ 0.36
CLN3-216ENST00000565316 NCAPHQ15003 741 aa17.31■□□□□ 0.36
CLN3-216ENST00000565316 CDKN3Q16667 212 aa17.31■□□□□ 0.36
CLN3-216ENST00000565316 DEFB133Q30KQ1 61 aa17.31■□□□□ 0.36
CLN3-216ENST00000565316 GUSBP11Q6P575 273 aa17.31■□□□□ 0.36
CLN3-216ENST00000565316 IGF2-ASQ6U949 168 aa17.31■□□□□ 0.36
CLN3-216ENST00000565316 MACC1Q6ZN28 852 aa17.31■□□□□ 0.36
CLN3-216ENST00000565316 ZNF354CQ86Y25 554 aa17.31■□□□□ 0.36
CLN3-216ENST00000565316 SPACA3Q8IXA5 215 aa17.31■□□□□ 0.36
CLN3-216ENST00000565316 MCOLN2Q8IZK6 566 aa17.31■□□□□ 0.36
CLN3-216ENST00000565316 RBFAQ8N0V3 343 aa17.31■□□□□ 0.36
CLN3-216ENST00000565316 NETO2Q8NC67 525 aa17.31■□□□□ 0.36
CLN3-216ENST00000565316 TPCN2Q8NHX9 752 aa17.31■□□□□ 0.36
CLN3-216ENST00000565316 CXorf40AQ8TE69 158 aa17.31■□□□□ 0.36
CLN3-216ENST00000565316 GRAMD1AQ96CP6 724 aa17.31■□□□□ 0.36
CLN3-216ENST00000565316 IL12RB2Q99665 862 aa17.31■□□□□ 0.36
CLN3-216ENST00000565316 SYT11Q9BT88 431 aa17.31■□□□□ 0.36
CLN3-216ENST00000565316 LRRC19Q9H756 370 aa17.31■□□□□ 0.36
CLN3-216ENST00000565316 MBNL1Q9NR56 388 aaKnown RBP17.31■□□□□ 0.36
CLN3-216ENST00000565316 SEPT11Q9NVA2 429 aaKnown RBP17.31■□□□□ 0.36
CLN3-216ENST00000565316 APOBEC3BQ9UH17 382 aaKnown RBP17.31■□□□□ 0.36
CLN3-216ENST00000565316 ATXN7O15265 892 aaPredicted RBP17.3■□□□□ 0.36
CLN3-216ENST00000565316 CREB3O43889 395 aa17.3■□□□□ 0.36
CLN3-216ENST00000565316 ERVPABLB-1P60509 514 aa17.3■□□□□ 0.36
CLN3-216ENST00000565316 GABREP78334 506 aa17.3■□□□□ 0.36
CLN3-216ENST00000565316 OGDHQ02218 1023 aa17.3■□□□□ 0.36
CLN3-216ENST00000565316 CCDC173Q0VFZ6 552 aa17.3■□□□□ 0.36
CLN3-216ENST00000565316 NR0B2Q15466 257 aa17.3■□□□□ 0.36
CLN3-216ENST00000565316 ISXQ2M1V0 245 aa17.3■□□□□ 0.36
CLN3-216ENST00000565316 KLHL40Q2TBA0 621 aa17.3■□□□□ 0.36
CLN3-216ENST00000565316 ACAD10Q6JQN1 1059 aa17.3■□□□□ 0.36
CLN3-216ENST00000565316 EFL1Q7Z2Z2 1120 aaKnown RBP17.3■□□□□ 0.36
CLN3-216ENST00000565316 IRF2BP2Q7Z5L9 587 aa17.3■□□□□ 0.36
CLN3-216ENST00000565316 PHACTR4Q8IZ21 702 aa17.3■□□□□ 0.36
CLN3-216ENST00000565316 LSM14AQ8ND56 463 aaKnown RBP17.3■□□□□ 0.36
CLN3-216ENST00000565316 ZNF248Q8NDW4 579 aa17.3■□□□□ 0.36
CLN3-216ENST00000565316 VCPIP1Q96JH7 1222 aa17.3■□□□□ 0.36
CLN3-216ENST00000565316 FCRL3Q96P31 734 aaPredicted RBP17.3■□□□□ 0.36
CLN3-216ENST00000565316 LRRC61Q9BV99 259 aa17.3■□□□□ 0.36
CLN3-216ENST00000565316 PDFQ9HBH1 243 aa17.3■□□□□ 0.36
CLN3-216ENST00000565316 DONSONQ9NYP3 566 aa17.3■□□□□ 0.36
CLN3-216ENST00000565316 CPED1A4D0V7 1026 aa17.29■□□□□ 0.36
CLN3-216ENST00000565316 EIF4E1BA6NMX2 242 aaKnown RBP17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms