RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 SPTY2D1-AS1A0A0U1RR47 76 aa15.05■□□□□ -0
CLN3-213ENST00000565047 A6NNZ2 444 aa15.05■□□□□ -0
CLN3-213ENST00000565047 SDC3O75056 442 aa15.05■□□□□ -0
CLN3-213ENST00000565047 PIAS2O75928 621 aa15.05■□□□□ -0
CLN3-213ENST00000565047 RNF8O76064 485 aa15.05■□□□□ -0
CLN3-213ENST00000565047 IGSF6O95976 241 aa15.05■□□□□ -0
CLN3-213ENST00000565047 PEX11BO96011 259 aa15.05■□□□□ -0
CLN3-213ENST00000565047 C1SP09871 688 aa15.05■□□□□ -0
CLN3-213ENST00000565047 HNRNPH3P31942 346 aaKnown RBP15.05■□□□□ -0
CLN3-213ENST00000565047 CSNK1DP48730 415 aa15.05■□□□□ -0
CLN3-213ENST00000565047 MAPK8IP2Q13387 824 aaPredicted RBP15.05■□□□□ -0
CLN3-213ENST00000565047 ZNF211Q13398 564 aaPredicted RBP15.05■□□□□ -0
CLN3-213ENST00000565047 DPYSL2Q16555 572 aa15.05■□□□□ -0
CLN3-213ENST00000565047 LRRC73Q5JTD7 316 aa15.05■□□□□ -0
CLN3-213ENST00000565047 POLNQ7Z5Q5 900 aa15.05■□□□□ -0
CLN3-213ENST00000565047 TTC7BQ86TV6 843 aa15.05■□□□□ -0
CLN3-213ENST00000565047 ZSWIM9Q86XI8 627 aa15.05■□□□□ -0
CLN3-213ENST00000565047 PROSER1Q86XN7 944 aa15.05■□□□□ -0
CLN3-213ENST00000565047 DCP2Q8IU60 420 aaKnown RBP15.05■□□□□ -0
CLN3-213ENST00000565047 ZCCHC14Q8WYQ9 949 aaKnown RBP15.05■□□□□ -0
CLN3-213ENST00000565047 EXOC2Q96KP1 924 aa15.05■□□□□ -0
CLN3-213ENST00000565047 MRPL47Q9HD33 250 aaKnown RBP15.05■□□□□ -0
CLN3-213ENST00000565047 DONSONQ9NYP3 566 aa15.05■□□□□ -0
CLN3-213ENST00000565047 MYO1AQ9UBC5 1043 aa15.05■□□□□ -0
CLN3-213ENST00000565047 UBA2Q9UBT2 640 aaPredicted RBP15.05■□□□□ -0
CLN3-213ENST00000565047 PNMA8BQ9ULN7 279 aaPredicted RBP15.05■□□□□ -0
CLN3-213ENST00000565047 LY6G6EA0A0G2JKS1 128 aa15.04■□□□□ -0
CLN3-213ENST00000565047 MUSKO15146 869 aa15.04■□□□□ -0
CLN3-213ENST00000565047 SIGLEC6O43699 453 aa15.04■□□□□ -0
CLN3-213ENST00000565047 PRPSAP2O60256 369 aa15.04■□□□□ -0
CLN3-213ENST00000565047 PIGNO95427 931 aa15.04■□□□□ -0
CLN3-213ENST00000565047 CSF2P04141 144 aa15.04■□□□□ -0
CLN3-213ENST00000565047 CYP1A2P05177 515 aa15.04■□□□□ -0
CLN3-213ENST00000565047 CKMT2P17540 419 aa15.04■□□□□ -0
CLN3-213ENST00000565047 DESP17661 470 aa15.04■□□□□ -0
CLN3-213ENST00000565047 IL4RP24394 825 aa15.04■□□□□ -0
CLN3-213ENST00000565047 ACP1P24666 158 aa15.04■□□□□ -0
CLN3-213ENST00000565047 ZNF135P52742 658 aaPredicted RBP15.04■□□□□ -0
CLN3-213ENST00000565047 SLC25A11Q02978 314 aaKnown RBP15.04■□□□□ -0
CLN3-213ENST00000565047 ASTE1Q2TB18 679 aaPredicted RBP15.04■□□□□ -0
CLN3-213ENST00000565047 TMEM52BQ4KMG9 183 aa15.04■□□□□ -0
CLN3-213ENST00000565047 TMPRSS12Q86WS5 348 aa15.04■□□□□ -0
CLN3-213ENST00000565047 GALNT15Q8N3T1 639 aa15.04■□□□□ -0
CLN3-213ENST00000565047 TP53I13Q8NBR0 393 aaPredicted RBP15.04■□□□□ -0
CLN3-213ENST00000565047 TSEN2Q8NCE0 465 aaKnown RBP15.04■□□□□ -0
CLN3-213ENST00000565047 DENND6BQ8NEG7 585 aa15.04■□□□□ -0
CLN3-213ENST00000565047 OR4C6Q8NH72 309 aa15.04■□□□□ -0
CLN3-213ENST00000565047 FAM71BQ8TC56 605 aa15.04■□□□□ -0
CLN3-213ENST00000565047 ECHDC3Q96DC8 303 aa15.04■□□□□ -0
CLN3-213ENST00000565047 ARHGEF26Q96DR7 871 aa15.04■□□□□ -0
CLN3-213ENST00000565047 IQCDQ96DY2 449 aa15.04■□□□□ -0
CLN3-213ENST00000565047 NCAPGQ9BPX3 1015 aa15.04■□□□□ -0
CLN3-213ENST00000565047 CALN1Q9BXU9 219 aa15.04■□□□□ -0
CLN3-213ENST00000565047 SUV39H2Q9H5I1 410 aa15.04■□□□□ -0
CLN3-213ENST00000565047 ETNK2Q9NVF9 386 aa15.04■□□□□ -0
CLN3-213ENST00000565047 IFNKQ9P0W0 207 aa15.04■□□□□ -0
CLN3-213ENST00000565047 DKK4Q9UBT3 224 aa15.04■□□□□ -0
CLN3-213ENST00000565047 U3KQA8 63 aa15.04■□□□□ -0
CLN3-213ENST00000565047 CHD6Q8TD26 2715 aa15.04■□□□□ -0
CLN3-213ENST00000565047 FAM149AA5PLN7 773 aa15.03■□□□□ -0
CLN3-213ENST00000565047 ARHGAP42A6NI28 874 aa15.03■□□□□ -0
CLN3-213ENST00000565047 MMP20O60882 483 aa15.03■□□□□ -0
CLN3-213ENST00000565047 RFPL3O75679 317 aa15.03■□□□□ -0
CLN3-213ENST00000565047 RARAP10276 462 aa15.03■□□□□ -0
CLN3-213ENST00000565047 IGFALSP35858 605 aa15.03■□□□□ -0
CLN3-213ENST00000565047 RABIFP47224 123 aa15.03■□□□□ -0
CLN3-213ENST00000565047 SUOXP51687 545 aa15.03■□□□□ -0
CLN3-213ENST00000565047 CLDN6P56747 220 aa15.03■□□□□ -0
CLN3-213ENST00000565047 TPM4P67936 248 aa15.03■□□□□ -0
CLN3-213ENST00000565047 RAD51Q06609 339 aa15.03■□□□□ -0
CLN3-213ENST00000565047 IL10RBQ08334 325 aa15.03■□□□□ -0
CLN3-213ENST00000565047 NSUN2Q08J23 767 aaKnown RBP eCLIP15.03■□□□□ -0
CLN3-213ENST00000565047 EIF2B5Q13144 721 aaKnown RBP15.03■□□□□ -0
CLN3-213ENST00000565047 PIGHQ14442 188 aaPredicted RBP15.03■□□□□ -0
CLN3-213ENST00000565047 BOLA3Q53S33 107 aa15.03■□□□□ -0
CLN3-213ENST00000565047 PPP6R3Q5H9R7 873 aaPredicted RBP15.03■□□□□ -0
CLN3-213ENST00000565047 ZNF354CQ86Y25 554 aa15.03■□□□□ -0
CLN3-213ENST00000565047 CPLX3Q8WVH0 158 aa15.03■□□□□ -0
CLN3-213ENST00000565047 RFFLQ8WZ73 363 aa15.03■□□□□ -0
CLN3-213ENST00000565047 BTBD6Q96KE9 485 aa15.03■□□□□ -0
CLN3-213ENST00000565047 ZNF641Q96N77 438 aaPredicted RBP15.03■□□□□ -0
CLN3-213ENST00000565047 TUBGCP5Q96RT8 1024 aa15.03■□□□□ -0
CLN3-213ENST00000565047 MBNL1Q9NR56 388 aaKnown RBP15.03■□□□□ -0
CLN3-213ENST00000565047 TRAFD1O14545 582 aaPredicted RBP15.02■□□□□ -0
CLN3-213ENST00000565047 RIOK3O14730 519 aaKnown RBP15.02■□□□□ -0
CLN3-213ENST00000565047 FPGTO14772 594 aa15.02■□□□□ -0
CLN3-213ENST00000565047 SCAMP1O15126 338 aa15.02■□□□□ -0
CLN3-213ENST00000565047 CDK4P11802 303 aa15.02■□□□□ -0
CLN3-213ENST00000565047 NME1P15531 152 aaKnown RBP15.02■□□□□ -0
CLN3-213ENST00000565047 CASP14P31944 242 aa15.02■□□□□ -0
CLN3-213ENST00000565047 ARSEP51690 589 aa15.02■□□□□ -0
CLN3-213ENST00000565047 SGCGQ13326 291 aa15.02■□□□□ -0
CLN3-213ENST00000565047 ILKQ13418 452 aa15.02■□□□□ -0
CLN3-213ENST00000565047 GRM3Q14832 879 aa15.02■□□□□ -0
CLN3-213ENST00000565047 AGERQ15109 404 aa15.02■□□□□ -0
CLN3-213ENST00000565047 UGP2Q16851 508 aa15.02■□□□□ -0
CLN3-213ENST00000565047 TDRD12Q587J7 1177 aaKnown RBP15.02■□□□□ -0
CLN3-213ENST00000565047 ZNF542PQ5EBM4 170 aa15.02■□□□□ -0
CLN3-213ENST00000565047 ALKBH5Q6P6C2 394 aaKnown RBP15.02■□□□□ -0
CLN3-213ENST00000565047 CAMK1DQ8IU85 385 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms