RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 KIF12Q96FN5 646 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 MTG1Q9BT17 334 aaPredicted RBP13.44□□□□□ -0.26
CLK3-206ENST00000562078 CFHR5Q9BXR6 569 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 CXCL16Q9H2A7 254 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 NOL11Q9H8H0 719 aaKnown RBP13.44□□□□□ -0.26
CLK3-206ENST00000562078 SMYD2Q9NRG4 433 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 DPP3Q9NY33 737 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 SEPT3Q9UH03 358 aa13.44□□□□□ -0.26
CLK3-206ENST00000562078 M0QYV0 167 aa13.43□□□□□ -0.26
CLK3-206ENST00000562078 RGS13O14921 159 aa13.43□□□□□ -0.26
CLK3-206ENST00000562078 AKAP10O43572 662 aa13.43□□□□□ -0.26
CLK3-206ENST00000562078 GABBR2O75899 941 aa13.43□□□□□ -0.26
CLK3-206ENST00000562078 TPPPO94811 219 aa13.43□□□□□ -0.26
CLK3-206ENST00000562078 CLIC3O95833 236 aa13.43□□□□□ -0.26
CLK3-206ENST00000562078 ME2P23368 584 aa13.43□□□□□ -0.26
CLK3-206ENST00000562078 HOXD10P28358 340 aa13.43□□□□□ -0.26
CLK3-206ENST00000562078 ATICP31939 592 aa13.43□□□□□ -0.26
CLK3-206ENST00000562078 KYAT1Q16773 422 aa13.43□□□□□ -0.26
CLK3-206ENST00000562078 SLC9B1Q4ZJI4 515 aa13.43□□□□□ -0.26
CLK3-206ENST00000562078 GALNT13Q8IUC8 556 aa13.43□□□□□ -0.26
CLK3-206ENST00000562078 JOSD2Q8TAC2 188 aa13.43□□□□□ -0.26
CLK3-206ENST00000562078 ADAM32Q8TC27 787 aa13.43□□□□□ -0.26
CLK3-206ENST00000562078 RCN3Q96D15 328 aa13.43□□□□□ -0.26
CLK3-206ENST00000562078 LHX5Q9H2C1 402 aa13.43□□□□□ -0.26
CLK3-206ENST00000562078 TRIT1Q9H3H1 467 aaKnown RBP13.43□□□□□ -0.26
CLK3-206ENST00000562078 POLE4Q9NR33 117 aa13.43□□□□□ -0.26
CLK3-206ENST00000562078 MRGBPQ9NV56 204 aa13.43□□□□□ -0.26
CLK3-206ENST00000562078 HMX2A2RU54 273 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 SOCS2O14508 198 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 ICMTO60725 284 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 NOL3O60936 208 aaKnown RBP13.42□□□□□ -0.26
CLK3-206ENST00000562078 MICAL2O94851 1124 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 ABCB1P08183 1280 aaPredicted RBP13.42□□□□□ -0.26
CLK3-206ENST00000562078 SMIM10L2AP0DMW4 78 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 SMIM10L2BP0DMW5 78 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 MYL4P12829 197 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 PSMA2P25787 234 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 CRHR1P34998 444 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 PSEN2P49810 448 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 CACNB2Q08289 660 aaPredicted RBP13.42□□□□□ -0.26
CLK3-206ENST00000562078 PIGHQ14442 188 aaPredicted RBP13.42□□□□□ -0.26
CLK3-206ENST00000562078 ZNF354CQ86Y25 554 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 ANKRD13BQ86YJ7 626 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 SLC35B2Q8TB61 432 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 HCAR2Q8TDS4 363 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 SH3YL1Q96HL8 342 aaPredicted RBP13.42□□□□□ -0.26
CLK3-206ENST00000562078 TMEM176AQ96HP8 235 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 ZNF347Q96SE7 839 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 VRTNQ9H8Y1 702 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 SPC25Q9HBM1 224 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 SRRDQ9UH36 339 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 TEX264Q9Y6I9 313 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 hCG_1818297A0A087WSY0 165 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 ILVBLA1L0T0 632 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 RRN3P2A6NIE6 340 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 GCATO75600 419 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 CRYZL1O95825 349 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 AMHP03971 560 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 ALOX5P09917 674 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 NAT2P11245 290 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 KRT3P12035 628 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 PRKAR2AP13861 404 aaKnown RBP13.42□□□□□ -0.26
CLK3-206ENST00000562078 PIK3R1P27986 724 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 CSE1LP55060 971 aaKnown RBP13.42□□□□□ -0.26
CLK3-206ENST00000562078 TNK2Q07912 1038 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 UBE2UQ5VVX9 321 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 BTBD8Q5XKL5 378 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 CCDC81Q6ZN84 652 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 HEATR4Q86WZ0 1026 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 EMC1Q8N766 993 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 RAET1EQ8TD07 263 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 MED30Q96HR3 178 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 PPP1R36Q96LQ0 422 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 OSMRQ99650 979 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 C17orf80Q9BSJ5 609 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 KATNAL1Q9BW62 490 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 COG4Q9H9E3 785 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 CYP3A43Q9HB55 503 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 CDHR5Q9HBB8 845 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 SMOXQ9NWM0 555 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 GDAP2Q9NXN4 497 aa13.42□□□□□ -0.26
CLK3-206ENST00000562078 PTBP2Q9UKA9 531 aaKnown RBP13.42□□□□□ -0.26
CLK3-206ENST00000562078 GOLGA8QA0A0J9YX86 632 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 GOLGA8OA6NCC3 632 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 GOLGA8NF8WBI6 632 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 SEPT4O43236 478 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 PGK1P00558 417 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 CSH1P0DML2 217 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 CSH2P0DML3 217 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 NDST1P52848 882 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 SMTNL2Q2TAL5 461 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 GNASQ5JWF2 1037 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 TMTC4Q5T4D3 741 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 LRRC38Q5VT99 294 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 HMBOX1Q6NT76 420 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 ZBTB49Q6ZSB9 765 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 CATSPER4Q7RTX7 472 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 XYLT1Q86Y38 959 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 GRAMD2AQ8IUY3 354 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 UNC45BQ8IWX7 931 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms