RNA–Protein interactions for RNA: ENST00000561266.5

TPM1-230, Transcript of tropomyosin 1, humanhuman

TSL 3

Gene TPM1, Length 671 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-230ENST00000561266 DLL3Q9NYJ7 618 aa14.06□□□□□ -0.16
TPM1-230ENST00000561266 PACSIN2Q9UNF0 486 aaPredicted RBP14.06□□□□□ -0.16
TPM1-230ENST00000561266 CAPN6Q9Y6Q1 641 aa14.06□□□□□ -0.16
TPM1-230ENST00000561266 CNOT1A5YKK6 2376 aaKnown RBP14.06□□□□□ -0.16
TPM1-230ENST00000561266 PCNX2A6NKB5 2137 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 TSPAN11A1L157 253 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 DCDC2BA2VCK2 349 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 TRAFD1O14545 582 aaPredicted RBP14.05□□□□□ -0.16
TPM1-230ENST00000561266 ARHGAP33O14559 1287 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 AREL1O15033 823 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 RAD51BO15315 384 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 PCDH8O95206 1070 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 SCNN1BP51168 640 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 GSDMDP57764 484 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 NSUN2Q08J23 767 aaKnown RBP eCLIP14.05□□□□□ -0.16
TPM1-230ENST00000561266 RFTN1Q14699 578 aaPredicted RBP14.05□□□□□ -0.16
TPM1-230ENST00000561266 KIF19Q2TAC6 998 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 TMEM259Q4ZIN3 620 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 KAZNQ674X7 775 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 FBXL19Q6PCT2 694 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 NT5DC3Q86UY8 548 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 HORMAD1Q86X24 394 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 VSIG1Q86XK7 387 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 OLFM3Q96PB7 478 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 TSGA13Q96PP4 275 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 SMIM14Q96QK8 99 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 MGME1Q9BQP7 344 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 GTPBP2Q9BX10 602 aaKnown RBP14.05□□□□□ -0.16
TPM1-230ENST00000561266 NUSAP1Q9BXS6 441 aaKnown RBP14.05□□□□□ -0.16
TPM1-230ENST00000561266 KDM4CQ9H3R0 1056 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 NOD2Q9HC29 1040 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 PREBQ9HCU5 417 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 NT5MQ9NPB1 228 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 LUC7LQ9NQ29 371 aaKnown RBP14.05□□□□□ -0.16
TPM1-230ENST00000561266 DYRK4Q9NR20 520 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 DKK3Q9UBP4 350 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 SEPT3Q9UH03 358 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 PCDHGC4Q9Y5F7 938 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 HEY1Q9Y5J3 304 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 SNX11Q9Y5W9 270 aa14.05□□□□□ -0.16
TPM1-230ENST00000561266 SPTBN2O15020 2390 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 hCG_1818297A0A087WSY0 165 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 IGLON5A6NGN9 336 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 PRR5-ARHGAP8B1AHC4 643 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 H0Y8X5 98 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 APOL1O14791 398 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 SLC30A4O14863 429 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 MATN3O15232 486 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 SLC31A1O15431 190 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 AP1G1O43747 822 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 FTCDO95954 541 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 GNSP15586 552 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 CCNCP24863 283 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 CTNNA1P35221 906 aaKnown RBP14.04□□□□□ -0.16
TPM1-230ENST00000561266 DPP6P42658 865 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 MMP13P45452 471 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 LIMK1P53667 647 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 NAP1L1P55209 391 aaKnown RBP14.04□□□□□ -0.16
TPM1-230ENST00000561266 ARHGAP8P85298 464 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 NIPAL4Q0D2K0 466 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 TRAF2Q12933 501 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 ZBTB17Q13105 803 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 IFI16Q16666 785 aaKnown RBP14.04□□□□□ -0.16
TPM1-230ENST00000561266 PRAMEF14Q5SWL7 426 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 TTC7BQ86TV6 843 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.04□□□□□ -0.16
TPM1-230ENST00000561266 CNTD1Q8N815 330 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 KIAA1524Q8TCG1 905 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 NETO1Q8TDF5 533 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 HDAC11Q96DB2 347 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 ECHDC3Q96DC8 303 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 PPP1R16AQ96I34 528 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 SERAC1Q96JX3 654 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 OSBPL1AQ9BXW6 950 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 SUSD2Q9UGT4 822 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 PCDHA3Q9Y5H8 950 aa14.04□□□□□ -0.16
TPM1-230ENST00000561266 A0A0U1RQS6 177 aa14.03□□□□□ -0.16
TPM1-230ENST00000561266 GOLGA6L3A6NEY3 463 aa14.03□□□□□ -0.16
TPM1-230ENST00000561266 KCNK1O00180 336 aa14.03□□□□□ -0.16
TPM1-230ENST00000561266 DDX3YO15523 660 aaKnown RBP14.03□□□□□ -0.16
TPM1-230ENST00000561266 CST8O60676 142 aa14.03□□□□□ -0.16
TPM1-230ENST00000561266 IPO7O95373 1038 aaKnown RBP14.03□□□□□ -0.16
TPM1-230ENST00000561266 PAK4O96013 591 aaPredicted RBP14.03□□□□□ -0.16
TPM1-230ENST00000561266 HLA-DQB2P05538 268 aa14.03□□□□□ -0.16
TPM1-230ENST00000561266 CTNNA2P26232 953 aa14.03□□□□□ -0.16
TPM1-230ENST00000561266 ID4P47928 161 aa14.03□□□□□ -0.16
TPM1-230ENST00000561266 CLDN2P57739 230 aa14.03□□□□□ -0.16
TPM1-230ENST00000561266 RACK1P63244 317 aaKnown RBP14.03□□□□□ -0.16
TPM1-230ENST00000561266 DSC2Q02487 901 aa14.03□□□□□ -0.16
TPM1-230ENST00000561266 RAD51Q06609 339 aa14.03□□□□□ -0.16
TPM1-230ENST00000561266 PPIDQ08752 370 aaKnown RBP14.03□□□□□ -0.16
TPM1-230ENST00000561266 HNRNPDQ14103 355 aaKnown RBP14.03□□□□□ -0.16
TPM1-230ENST00000561266 ZNF235Q14590 738 aa14.03□□□□□ -0.16
TPM1-230ENST00000561266 MARC1Q5VT66 337 aa14.03□□□□□ -0.16
TPM1-230ENST00000561266 SPATS2Q86XZ4 545 aaKnown RBP14.03□□□□□ -0.16
TPM1-230ENST00000561266 RCOR2Q8IZ40 523 aa14.03□□□□□ -0.16
TPM1-230ENST00000561266 MINDY1Q8N5J2 469 aa14.03□□□□□ -0.16
TPM1-230ENST00000561266 TMEM145Q8NBT3 493 aa14.03□□□□□ -0.16
TPM1-230ENST00000561266 ARRDC2Q8TBH0 407 aa14.03□□□□□ -0.16
TPM1-230ENST00000561266 HAUS1Q96CS2 278 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms