RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 RHOXF2Q9BQY4 288 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 ARGLU1Q9NWB6 273 aaPredicted RBP11.99□□□□□ -0.49
LDLR-212ENST00000560467 TMEM248Q9NWD8 314 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 ASIC3Q9UHC3 531 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 AMACRQ9UHK6 382 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 XPO7Q9UIA9 1087 aaKnown RBP11.99□□□□□ -0.49
LDLR-212ENST00000560467 KNL1Q8NG31 2342 aa11.99□□□□□ -0.49
LDLR-212ENST00000560467 GOLGA6L7A0A1B0GV03 622 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 A0A1B0GVM2 712 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 TCAF2A6NFQ2 919 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 DFFAO00273 331 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 TSPAN3O60637 253 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 ERLIN1O75477 346 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 IFNB1P01574 187 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 IGLV3-19P01714 112 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 ZNF883P0CG24 379 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 OXTRP30559 389 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 GGCXP38435 758 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 CSNK1EP49674 416 aaKnown RBP11.98□□□□□ -0.49
LDLR-212ENST00000560467 GBE1Q04446 702 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 POLD3Q15054 466 aaPredicted RBP11.98□□□□□ -0.49
LDLR-212ENST00000560467 SLC45A4Q5BKX6 768 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 TMEM215Q68D42 235 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 NCBP2-AS2Q69YL0 99 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 RFWD3Q6PCD5 774 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 LAYNQ6UX15 382 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 ZNF783Q6ZMS7 281 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 TFAP2DQ7Z6R9 452 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 C14orf80Q86SX3 495 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 SETD3Q86TU7 594 aaPredicted RBP11.98□□□□□ -0.49
LDLR-212ENST00000560467 UMODL1-AS1Q8N2C9 162 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 UCMAQ8WVF2 138 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 ATG4AQ8WYN0 398 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 BBC3Q96PG8 261 aaPredicted RBP11.98□□□□□ -0.49
LDLR-212ENST00000560467 LRRC1Q9BTT6 524 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 CIPCQ9C0C6 399 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 MAGEH1Q9H213 219 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 C6orf106Q9H6K1 298 aaPredicted RBP11.98□□□□□ -0.49
LDLR-212ENST00000560467 ANLNQ9NQW6 1124 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 FAM114A2Q9NRY5 505 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 ELOVL2Q9NXB9 296 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 MPP6Q9NZW5 540 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 SAE1Q9UBE0 346 aaPredicted RBP11.98□□□□□ -0.49
LDLR-212ENST00000560467 DNPEPQ9ULA0 475 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 R3HDM2Q9Y2K5 976 aaKnown RBP11.98□□□□□ -0.49
LDLR-212ENST00000560467 ASXL3Q9C0F0 2248 aa11.98□□□□□ -0.49
LDLR-212ENST00000560467 FAM149AA5PLN7 773 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 GOLGA6CA6NDK9 693 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 GOLGA6BA6NDN3 693 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 I6L893 689 aaPredicted RBP11.97□□□□□ -0.49
LDLR-212ENST00000560467 NPC1O15118 1278 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 KCNN4O15554 427 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 TBL1XO60907 577 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 DKK1O94907 266 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 HEXIM1O94992 359 aaKnown RBP11.97□□□□□ -0.49
LDLR-212ENST00000560467 EPHX1P07099 455 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 RHOCP08134 193 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 GOLGA6DP0CG33 693 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 ACADMP11310 421 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 KCNJ1P48048 391 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 GUCY2DQ02846 1103 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 ADCY2Q08462 1091 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 GALNT2Q10471 571 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 ERCC6LQ2NKX8 1250 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 KIF19Q2TAC6 998 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 C5orf22Q49AR2 442 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 MAP9Q49MG5 647 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 CCDC157Q569K6 752 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 FAM133BQ5BKY9 247 aaKnown RBP11.97□□□□□ -0.49
LDLR-212ENST00000560467 TMCO4Q5TGY1 634 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 MANEALQ5VSG8 457 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 IL27RAQ6UWB1 636 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 NPNTQ6UXI9 565 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 SERPINA13PQ6UXR4 307 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 ARHGEF18Q6ZSZ5 1173 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 CEP128Q6ZU80 1094 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 TMPRSS7Q7RTY8 843 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 PCGF5Q86SE9 256 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 CFAP52Q8N1V2 620 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 CARNMT1Q8N4J0 409 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 ZNF366Q8N895 744 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 NOA1Q8NC60 698 aaKnown RBP11.97□□□□□ -0.49
LDLR-212ENST00000560467 SLC35B2Q8TB61 432 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 RHBDD1Q8TEB9 315 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 HTR3CQ8WXA8 447 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 SLCO2A1Q92959 643 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 IGSF8Q969P0 613 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 LRIG1Q96JA1 1093 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 PPP1R2P1Q96PQ5 205 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 VAT1Q99536 393 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 PRMT1Q99873 361 aaKnown RBP11.97□□□□□ -0.49
LDLR-212ENST00000560467 FAM118BQ9BPY3 351 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 SPON2Q9BUD6 331 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 MAGEB5Q9BZ81 275 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 TSPYL1Q9H0U9 437 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 MUC3BQ9H195 1237 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 SP110Q9HB58 689 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 GOLGA6AQ9NYA3 693 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 DTLQ9NZJ0 730 aa11.97□□□□□ -0.49
LDLR-212ENST00000560467 TRHDEQ9UKU6 1024 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms