RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 PECAM1P16284 738 aaPredicted RBP13.14□□□□□ -0.31
NEDD8-208ENST00000560427 ITPKAP23677 461 aa13.14□□□□□ -0.31
NEDD8-208ENST00000560427 NFKBIAP25963 317 aa13.14□□□□□ -0.31
NEDD8-208ENST00000560427 CD27P26842 260 aa13.14□□□□□ -0.31
NEDD8-208ENST00000560427 GKP32189 559 aa13.14□□□□□ -0.31
NEDD8-208ENST00000560427 TAS2R38P59533 333 aa13.14□□□□□ -0.31
NEDD8-208ENST00000560427 POLR2LP62875 67 aaKnown RBP13.14□□□□□ -0.31
NEDD8-208ENST00000560427 ADCY2Q08462 1091 aa13.14□□□□□ -0.31
NEDD8-208ENST00000560427 AP1B1Q10567 949 aa13.14□□□□□ -0.31
NEDD8-208ENST00000560427 NOMO1Q15155 1222 aa13.14□□□□□ -0.31
NEDD8-208ENST00000560427 SEL1L2Q5TEA6 688 aa13.14□□□□□ -0.31
NEDD8-208ENST00000560427 KIAA1161Q6NSJ0 714 aa13.14□□□□□ -0.31
NEDD8-208ENST00000560427 NPNTQ6UXI9 565 aa13.14□□□□□ -0.31
NEDD8-208ENST00000560427 ARMCX6Q7L4S7 300 aa13.14□□□□□ -0.31
NEDD8-208ENST00000560427 RGL4Q8IZJ4 473 aa13.14□□□□□ -0.31
NEDD8-208ENST00000560427 PGBD5Q8N414 524 aa13.14□□□□□ -0.31
NEDD8-208ENST00000560427 PIGKQ92643 395 aa13.14□□□□□ -0.31
NEDD8-208ENST00000560427 BIRC7Q96CA5 298 aa13.14□□□□□ -0.31
NEDD8-208ENST00000560427 HAUS1Q96CS2 278 aa13.14□□□□□ -0.31
NEDD8-208ENST00000560427 QKIQ96PU8 341 aaKnown RBP eCLIP13.14□□□□□ -0.31
NEDD8-208ENST00000560427 HEMGNQ9BXL5 484 aa13.14□□□□□ -0.31
NEDD8-208ENST00000560427 ARRDC1-AS1Q9H2J1 176 aa13.14□□□□□ -0.31
NEDD8-208ENST00000560427 NT5MQ9NPB1 228 aa13.14□□□□□ -0.31
NEDD8-208ENST00000560427 DMTF1Q9Y222 760 aa13.14□□□□□ -0.31
NEDD8-208ENST00000560427 FADS3Q9Y5Q0 445 aa13.14□□□□□ -0.31
NEDD8-208ENST00000560427 TNRC6BQ9UPQ9 1833 aaKnown RBP13.13□□□□□ -0.31
NEDD8-208ENST00000560427 TBC1D3DA0A087WVF3 549 aa13.13□□□□□ -0.31
NEDD8-208ENST00000560427 TBC1D3IA0A087WXS9 549 aa13.13□□□□□ -0.31
NEDD8-208ENST00000560427 TBC1D3EA0A087X179 549 aa13.13□□□□□ -0.31
NEDD8-208ENST00000560427 TBC1D3KA0A087X1G2 549 aa13.13□□□□□ -0.31
NEDD8-208ENST00000560427 A0A1W2PPC4 97 aa13.13□□□□□ -0.31
NEDD8-208ENST00000560427 TBC1D3FA6NER0 549 aaPredicted RBP13.13□□□□□ -0.31
NEDD8-208ENST00000560427 FAM47DPA6NHR8 397 aa13.13□□□□□ -0.31
NEDD8-208ENST00000560427 TBC1D3LB9A6J9 549 aa13.13□□□□□ -0.31
NEDD8-208ENST00000560427 KCNK1O00180 336 aa13.13□□□□□ -0.31
NEDD8-208ENST00000560427 RNF103O00237 685 aa13.13□□□□□ -0.31
NEDD8-208ENST00000560427 TRAFD1O14545 582 aaPredicted RBP13.13□□□□□ -0.31
NEDD8-208ENST00000560427 HTRA2O43464 458 aaPredicted RBP13.13□□□□□ -0.31
NEDD8-208ENST00000560427 FSBPO95073 299 aa13.13□□□□□ -0.31
NEDD8-208ENST00000560427 TBC1D3HP0C7X1 549 aa13.13□□□□□ -0.31
NEDD8-208ENST00000560427 XPAP23025 273 aaPredicted RBP13.13□□□□□ -0.31
NEDD8-208ENST00000560427 RPS21P63220 83 aaKnown RBP13.13□□□□□ -0.31
NEDD8-208ENST00000560427 ELP6Q0PNE2 266 aa13.13□□□□□ -0.31
NEDD8-208ENST00000560427 SLC14A2Q15849 920 aa13.13□□□□□ -0.31
NEDD8-208ENST00000560427 DUOXA1Q1HG43 343 aa13.13□□□□□ -0.31
NEDD8-208ENST00000560427 SLC45A4Q5BKX6 768 aa13.13□□□□□ -0.31
NEDD8-208ENST00000560427 TBC1D3GQ6DHY5 549 aa13.13□□□□□ -0.31
NEDD8-208ENST00000560427 TBC1D3CQ6IPX1 549 aa13.13□□□□□ -0.31
NEDD8-208ENST00000560427 ERAP2Q6P179 960 aa13.13□□□□□ -0.31
NEDD8-208ENST00000560427 HORMAD1Q86X24 394 aa13.13□□□□□ -0.31
NEDD8-208ENST00000560427 CDKL3Q8IVW4 592 aaPredicted RBP13.13□□□□□ -0.31
NEDD8-208ENST00000560427 REXO1L1PQ8IX06 675 aa13.13□□□□□ -0.31
NEDD8-208ENST00000560427 TBC1D3Q8IZP1 549 aaPredicted RBP13.13□□□□□ -0.31
NEDD8-208ENST00000560427 SEMA3CQ99985 751 aa13.13□□□□□ -0.31
NEDD8-208ENST00000560427 FRMD8P1Q9BZ68 369 aaPredicted RBP13.13□□□□□ -0.31
NEDD8-208ENST00000560427 SEMA4GQ9NTN9 838 aa13.13□□□□□ -0.31
NEDD8-208ENST00000560427 ATP8A1Q9Y2Q0 1164 aa13.13□□□□□ -0.31
NEDD8-208ENST00000560427 ZFHX2Q9C0A1 2572 aaPredicted RBP13.13□□□□□ -0.31
NEDD8-208ENST00000560427 USP34Q70CQ2 3546 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 A0A1B0GTW7 788 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 UPK3BL1B0FP48 263 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 UPK3BL2E5RIL1 263 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 PLK4O00444 970 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 AREL1O15033 823 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 KHNYNO15037 678 aaKnown RBP13.12□□□□□ -0.31
NEDD8-208ENST00000560427 KIF5CO60282 957 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 RNGTTO60942 597 aaKnown RBP13.12□□□□□ -0.31
NEDD8-208ENST00000560427 JCHAINP01591 159 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 HLA-DQB2P05538 268 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 SERPINF2P08697 491 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 HOXD11P31277 338 aaPredicted RBP13.12□□□□□ -0.31
NEDD8-208ENST00000560427 ABL2P42684 1182 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 MAXP61244 160 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 LMNB2Q03252 620 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 SPEM2Q0P670 501 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 ZBTB17Q13105 803 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 KLF1Q13351 362 aaPredicted RBP13.12□□□□□ -0.31
NEDD8-208ENST00000560427 ZNF211Q13398 564 aaPredicted RBP13.12□□□□□ -0.31
NEDD8-208ENST00000560427 LLGL1Q15334 1064 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 UGP2Q16851 508 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 SETMARQ53H47 684 aaPredicted RBP13.12□□□□□ -0.31
NEDD8-208ENST00000560427 TEX44Q53QW1 395 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 SLC23A3Q6PIS1 610 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 TTC7BQ86TV6 843 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 PRPF39Q86UA1 669 aaKnown RBP13.12□□□□□ -0.31
NEDD8-208ENST00000560427 ALYREFQ86V81 257 aaKnown RBP13.12□□□□□ -0.31
NEDD8-208ENST00000560427 CAMK1DQ8IU85 385 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 DEFB119Q8N690 84 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 PAF1Q8N7H5 531 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 ACTL9Q8TC94 416 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 ASB12Q8WXK4 309 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 SNX19Q92543 992 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 FEM1CQ96JP0 617 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 NOD2Q9HC29 1040 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 SAE1Q9UBE0 346 aaPredicted RBP13.12□□□□□ -0.31
NEDD8-208ENST00000560427 JRKLQ9Y4A0 524 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 THADAQ6YHU6 1953 aa13.12□□□□□ -0.31
NEDD8-208ENST00000560427 CFAP69A5D8W1 941 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 NEMP1O14524 444 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 BCAT2O15382 392 aaPredicted RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms