RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 ZSWIM3Q96MP5 696 aa18■□□□□ 0.47
SNX1-208ENST00000559844 RBBP8Q99708 897 aa18■□□□□ 0.47
SNX1-208ENST00000559844 FSD1LQ9BXM9 530 aa18■□□□□ 0.47
SNX1-208ENST00000559844 SLC25A51Q9H1U9 297 aa18■□□□□ 0.47
SNX1-208ENST00000559844 MRM3Q9HC36 420 aaKnown RBP18■□□□□ 0.47
SNX1-208ENST00000559844 CHRAC1Q9NRG0 131 aa18■□□□□ 0.47
SNX1-208ENST00000559844 C20orf96Q9NUD7 363 aaPredicted RBP18■□□□□ 0.47
SNX1-208ENST00000559844 SLC17A6Q9P2U8 582 aa18■□□□□ 0.47
SNX1-208ENST00000559844 PSAT1Q9Y617 370 aa18■□□□□ 0.47
SNX1-208ENST00000559844 NYNRINQ9P2P1 1898 aaKnown RBP18■□□□□ 0.47
SNX1-208ENST00000559844 CNTN5O94779 1100 aa18■□□□□ 0.47
SNX1-208ENST00000559844 TGDSO95455 350 aa18■□□□□ 0.47
SNX1-208ENST00000559844 OLFM2O95897 454 aa18■□□□□ 0.47
SNX1-208ENST00000559844 MT-CYBP00156 380 aaPredicted RBP18■□□□□ 0.47
SNX1-208ENST00000559844 MBL2P11226 248 aaPredicted RBP18■□□□□ 0.47
SNX1-208ENST00000559844 BGNP21810 368 aa18■□□□□ 0.47
SNX1-208ENST00000559844 ADRA1AP35348 466 aa18■□□□□ 0.47
SNX1-208ENST00000559844 AVPR1AP37288 418 aa18■□□□□ 0.47
SNX1-208ENST00000559844 LIMK2P53671 638 aa18■□□□□ 0.47
SNX1-208ENST00000559844 TFF2Q03403 129 aa18■□□□□ 0.47
SNX1-208ENST00000559844 TNK2Q07912 1038 aa18■□□□□ 0.47
SNX1-208ENST00000559844 INSCQ1MX18 579 aa18■□□□□ 0.47
SNX1-208ENST00000559844 SPRED3Q2MJR0 410 aa18■□□□□ 0.47
SNX1-208ENST00000559844 LEXMQ3ZCV2 418 aa18■□□□□ 0.47
SNX1-208ENST00000559844 GALNTL6Q49A17 601 aa18■□□□□ 0.47
SNX1-208ENST00000559844 PKN3Q6P5Z2 889 aa18■□□□□ 0.47
SNX1-208ENST00000559844 KLHDC10Q6PID8 442 aa18■□□□□ 0.47
SNX1-208ENST00000559844 CMTM8Q8IZV2 173 aa18■□□□□ 0.47
SNX1-208ENST00000559844 ARMC2Q8NEN0 867 aa18■□□□□ 0.47
SNX1-208ENST00000559844 ISL2Q96A47 359 aa18■□□□□ 0.47
SNX1-208ENST00000559844 MFSD3Q96ES6 412 aa18■□□□□ 0.47
SNX1-208ENST00000559844 SMG9Q9H0W8 520 aaKnown RBP18■□□□□ 0.47
SNX1-208ENST00000559844 NUP205Q92621 2012 aa17.99■□□□□ 0.47
SNX1-208ENST00000559844 SOBPA7XYQ1 873 aa17.99■□□□□ 0.47
SNX1-208ENST00000559844 F5H5T6 163 aa17.99■□□□□ 0.47
SNX1-208ENST00000559844 TIMM44O43615 452 aa17.99■□□□□ 0.47
SNX1-208ENST00000559844 RAMP2O60895 175 aa17.99■□□□□ 0.47
SNX1-208ENST00000559844 UBOX5O94941 541 aa17.99■□□□□ 0.47
SNX1-208ENST00000559844 PEX11BO96011 259 aa17.99■□□□□ 0.47
SNX1-208ENST00000559844 ALDOAP04075 364 aaKnown RBP17.99■□□□□ 0.47
SNX1-208ENST00000559844 PFKLP17858 780 aa17.99■□□□□ 0.47
SNX1-208ENST00000559844 TACR2P21452 398 aa17.99■□□□□ 0.47
SNX1-208ENST00000559844 MARC1Q5VT66 337 aa17.99■□□□□ 0.47
SNX1-208ENST00000559844 STRA8Q7Z7C7 330 aa17.99■□□□□ 0.47
SNX1-208ENST00000559844 C10orf82Q8WW14 230 aa17.99■□□□□ 0.47
SNX1-208ENST00000559844 PTPRN2Q92932 1015 aa17.99■□□□□ 0.47
SNX1-208ENST00000559844 RMDN2Q96LZ7 410 aa17.99■□□□□ 0.47
SNX1-208ENST00000559844 TRIM55Q9BYV6 548 aa17.99■□□□□ 0.47
SNX1-208ENST00000559844 SMPD4Q9NXE4 827 aa17.99■□□□□ 0.47
SNX1-208ENST00000559844 ZMYM5Q9UJ78 669 aa17.99■□□□□ 0.47
SNX1-208ENST00000559844 CDH7Q9ULB5 785 aa17.99■□□□□ 0.47
SNX1-208ENST00000559844 SP100P23497 879 aaPredicted RBP17.99■□□□□ 0.47
SNX1-208ENST00000559844 HADHAP40939 763 aa17.99■□□□□ 0.47
SNX1-208ENST00000559844 SERPINB8P50452 374 aa17.99■□□□□ 0.47
SNX1-208ENST00000559844 IL10RBQ08334 325 aa17.99■□□□□ 0.47
SNX1-208ENST00000559844 POLD3Q15054 466 aaPredicted RBP17.99■□□□□ 0.47
SNX1-208ENST00000559844 FAM133BQ5BKY9 247 aaKnown RBP17.99■□□□□ 0.47
SNX1-208ENST00000559844 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.99■□□□□ 0.47
SNX1-208ENST00000559844 TEX26Q8N6G2 289 aa17.99■□□□□ 0.47
SNX1-208ENST00000559844 E2F7Q96AV8 911 aa17.99■□□□□ 0.47
SNX1-208ENST00000559844 ZNF419Q96HQ0 510 aaPredicted RBP17.99■□□□□ 0.47
SNX1-208ENST00000559844 VPS45Q9NRW7 570 aa17.99■□□□□ 0.47
SNX1-208ENST00000559844 GDE1Q9NZC3 331 aa17.99■□□□□ 0.47
SNX1-208ENST00000559844 SIRPGQ9P1W8 387 aa17.99■□□□□ 0.47
SNX1-208ENST00000559844 NMBRP28336 390 aa17.98■□□□□ 0.47
SNX1-208ENST00000559844 TYK2P29597 1187 aa17.98■□□□□ 0.47
SNX1-208ENST00000559844 SLC11A2P49281 568 aa17.98■□□□□ 0.47
SNX1-208ENST00000559844 C5orf22Q49AR2 442 aa17.98■□□□□ 0.47
SNX1-208ENST00000559844 HSP90AA5PQ58FG0 334 aa17.98■□□□□ 0.47
SNX1-208ENST00000559844 DENND5AQ6IQ26 1287 aa17.98■□□□□ 0.47
SNX1-208ENST00000559844 PTCRAQ6ISU1 281 aaPredicted RBP17.98■□□□□ 0.47
SNX1-208ENST00000559844 ZNF354CQ86Y25 554 aa17.98■□□□□ 0.47
SNX1-208ENST00000559844 NUDCD3Q8IVD9 361 aa17.98■□□□□ 0.47
SNX1-208ENST00000559844 FITM2Q8N6M3 262 aa17.98■□□□□ 0.47
SNX1-208ENST00000559844 IMP4Q96G21 291 aaKnown RBP17.98■□□□□ 0.47
SNX1-208ENST00000559844 MRGPRX2Q96LB1 330 aa17.98■□□□□ 0.47
SNX1-208ENST00000559844 MYADMQ96S97 322 aa17.98■□□□□ 0.47
SNX1-208ENST00000559844 IL1RAPL1Q9NZN1 696 aa17.98■□□□□ 0.47
SNX1-208ENST00000559844 ZNF212Q9UDV6 495 aa17.98■□□□□ 0.47
SNX1-208ENST00000559844 CPQQ9Y646 472 aa17.98■□□□□ 0.47
SNX1-208ENST00000559844 ACSL4O60488 711 aa17.97■□□□□ 0.47
SNX1-208ENST00000559844 PMPCBO75439 489 aa17.97■□□□□ 0.47
SNX1-208ENST00000559844 PRAMEF12O95522 483 aa17.97■□□□□ 0.47
SNX1-208ENST00000559844 MPOP05164 745 aa17.97■□□□□ 0.47
SNX1-208ENST00000559844 BPGMP07738 259 aa17.97■□□□□ 0.47
SNX1-208ENST00000559844 PAMP19021 973 aa17.97■□□□□ 0.47
SNX1-208ENST00000559844 MAGEA12P43365 314 aa17.97■□□□□ 0.47
SNX1-208ENST00000559844 HARS2P49590 506 aaKnown RBP17.97■□□□□ 0.47
SNX1-208ENST00000559844 SLC7A9P82251 487 aa17.97■□□□□ 0.47
SNX1-208ENST00000559844 BNIP1Q12981 228 aa17.97■□□□□ 0.47
SNX1-208ENST00000559844 PDE1CQ14123 709 aaPredicted RBP17.97■□□□□ 0.47
SNX1-208ENST00000559844 NADSYN1Q6IA69 706 aa17.97■□□□□ 0.47
SNX1-208ENST00000559844 RANBP10Q6VN20 620 aa17.97■□□□□ 0.47
SNX1-208ENST00000559844 ARID3BQ8IVW6 561 aaPredicted RBP17.97■□□□□ 0.47
SNX1-208ENST00000559844 TTC16Q8NEE8 873 aa17.97■□□□□ 0.47
SNX1-208ENST00000559844 PLD4Q96BZ4 506 aa17.97■□□□□ 0.47
SNX1-208ENST00000559844 C7orf26Q96N11 449 aa17.97■□□□□ 0.47
SNX1-208ENST00000559844 NPHS2Q9NP85 383 aa17.97■□□□□ 0.47
SNX1-208ENST00000559844 IARS2Q9NSE4 1012 aaKnown RBP17.97■□□□□ 0.47
SNX1-208ENST00000559844 GGT7Q9UJ14 662 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms