RNA–Protein interactions for RNA: ENST00000556445.1

SRP54-211, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 530 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-211ENST00000556445 ANKRD40Q6AI12 368 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 ALKBH5Q6P6C2 394 aaKnown RBP5.36□□□□□ -1.55
SRP54-211ENST00000556445 CATSPERGQ6ZRH7 1159 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 SPATA31D4Q6ZUB0 917 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 SEM1Q6ZVN7 128 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 USP50Q70EL3 339 aaPredicted RBP5.36□□□□□ -1.55
SRP54-211ENST00000556445 MED25Q71SY5 747 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 APTXQ7Z2E3 356 aaKnown RBP5.36□□□□□ -1.55
SRP54-211ENST00000556445 MIER3Q7Z3K6 550 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 CATSPER3Q86XQ3 398 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 CCAR2Q8N163 923 aaKnown RBP5.36□□□□□ -1.55
SRP54-211ENST00000556445 CPEB3Q8NE35 698 aaKnown RBP5.36□□□□□ -1.55
SRP54-211ENST00000556445 OR56A1Q8NGH5 318 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 NRG4Q8WWG1 115 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 EID2BQ96D98 161 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 CYFIP2Q96F07 1278 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 CNOT6LQ96LI5 555 aaKnown RBP5.36□□□□□ -1.55
SRP54-211ENST00000556445 MED15Q96RN5 788 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 ERGIC2Q96RQ1 377 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 TUBGCP2Q9BSJ2 902 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 TEX13BQ9BXU2 312 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 VPS16Q9H269 839 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 SERHL2Q9H4I8 314 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 ACAD9Q9H845 621 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 OLFML3Q9NRN5 406 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 TMEM140Q9NV12 185 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 FBXO28Q9NVF7 368 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 COMMD8Q9NX08 183 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 RNF181Q9P0P0 153 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 IGSF9Q9P2J2 1179 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 CGNQ9P2M7 1197 aaKnown RBP5.36□□□□□ -1.55
SRP54-211ENST00000556445 GTF3C4Q9UKN8 822 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 PCDHGB4Q9UN71 923 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 MAN2B2Q9Y2E5 1009 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 UBIAD1Q9Y5Z9 338 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 CFAP20Q9Y6A4 193 aaKnown RBP5.36□□□□□ -1.55
SRP54-211ENST00000556445 IKBKGQ9Y6K9 419 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 ZHX2Q9Y6X8 837 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 UBE4BO95155 1302 aa5.36□□□□□ -1.55
SRP54-211ENST00000556445 PHIPQ8WWQ0 1821 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 PFASO15067 1338 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 A0A1W2PPL8 197 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 UBE2CO00762 179 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 PDXKO00764 312 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 CXCL11O14625 94 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 CETN3O15182 167 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 TEX33O43247 280 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 GPR32O75388 356 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 MED24O75448 989 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 IPO7O95373 1038 aaKnown RBP5.35□□□□□ -1.55
SRP54-211ENST00000556445 CFIP05156 583 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 ELANEP08246 267 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 CSF1P09603 554 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 CCDC175P0C221 793 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 KITP10721 976 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 ACADMP11310 421 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 FCER1AP12319 257 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 TRIM21P19474 475 aaKnown RBP5.35□□□□□ -1.55
SRP54-211ENST00000556445 SLC6A2P23975 617 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 CYLC1P35663 651 aaPredicted RBP5.35□□□□□ -1.55
SRP54-211ENST00000556445 EPS15P42566 896 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 MSH2P43246 934 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 CCR9P51686 369 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 HMGCS2P54868 508 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 SUMO3P55854 103 aaPredicted RBP5.35□□□□□ -1.55
SRP54-211ENST00000556445 PPATQ06203 517 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 TUBB2AQ13885 445 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 GIT2Q14161 759 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 SLMAPQ14BN4 828 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 UBXN2BQ14CS0 331 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 NFIL3Q16649 462 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 CCDC40Q4G0X9 1142 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 CCDC157Q569K6 752 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 HSP90AA4PQ58FG1 418 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 MAP3K21Q5TCX8 1036 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 ARHGEF16Q5VV41 709 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 GPR139Q6DWJ6 353 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 ZNF529Q6P280 563 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 BBS12Q6ZW61 710 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 BEND5Q7L4P6 421 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 CCDC91Q7Z6B0 441 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 MTERF4Q7Z6M4 381 aaKnown RBP5.35□□□□□ -1.55
SRP54-211ENST00000556445 EGFL6Q8IUX8 553 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 CEP97Q8IW35 865 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 TC2NQ8N9U0 490 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 KIAA0895Q8NCT3 520 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 OR8K1Q8NGG5 319 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 GOLGA5Q8TBA6 731 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 CCHCR1Q8TD31 782 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 LRRC15Q8TF66 581 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 THAP4Q8WY91 577 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 C16orf45Q96MC5 204 aaPredicted RBP5.35□□□□□ -1.55
SRP54-211ENST00000556445 CCDC43Q96MW1 224 aaKnown RBP5.35□□□□□ -1.55
SRP54-211ENST00000556445 HSD17B14Q9BPX1 270 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 SLX1AQ9BQ83 275 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 TUBB2BQ9BVA1 445 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 GLIS2Q9BZE0 524 aaPredicted RBP5.35□□□□□ -1.55
SRP54-211ENST00000556445 GPR63Q9BZJ6 419 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 EPS8L2Q9H6S3 715 aa5.35□□□□□ -1.55
SRP54-211ENST00000556445 MANSC1Q9H8J5 431 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms