RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 UPK3BL2E5RIL1 263 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 H0Y8X5 98 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 NEMP1O14524 444 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 KCNK3O14649 394 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 AREL1O15033 823 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 TSPAN6O43657 245 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 SPOPO43791 374 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 BUB1BO60566 1050 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-219ENST00000555563 ADRB1P08588 477 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 ZNF883P0CG24 379 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 TNNT1P13805 278 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 GARSP41250 739 aaKnown RBP13.87□□□□□ -0.19
SHMT2-219ENST00000555563 SLC1A1P43005 524 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 CSNK1DP48730 415 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 NXPH1P58417 271 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 RPS21P63220 83 aaKnown RBP13.87□□□□□ -0.19
SHMT2-219ENST00000555563 GBE1Q04446 702 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 SLC14A1Q13336 389 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 ZNF235Q14590 738 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 GRM3Q14832 879 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 LRRC38Q5VT99 294 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 SRLQ86TD4 932 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 TTC7BQ86TV6 843 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 ZSWIM9Q86XI8 627 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 CAMK1DQ8IU85 385 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 TMEM139Q8IV31 216 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 RHOT1Q8IXI2 618 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 PGBD5Q8N414 524 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 MFSD2AQ8NA29 543 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 SKA1Q96BD8 255 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 ZNF641Q96N77 438 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-219ENST00000555563 ANP32EQ9BTT0 268 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 TM7SF3Q9NS93 570 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 REXO2Q9Y3B8 237 aaKnown RBP13.87□□□□□ -0.19
SHMT2-219ENST00000555563 EPN1Q9Y6I3 576 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-219ENST00000555563 ANKRD36A6QL64 1941 aa13.87□□□□□ -0.19
SHMT2-219ENST00000555563 A0A0A6YYK5 440 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-219ENST00000555563 RCCD1A6NED2 376 aa13.86□□□□□ -0.19
SHMT2-219ENST00000555563 ZNF487B1APH4 448 aa13.86□□□□□ -0.19
SHMT2-219ENST00000555563 IPO7O95373 1038 aaKnown RBP13.86□□□□□ -0.19
SHMT2-219ENST00000555563 TIMP2P16035 220 aa13.86□□□□□ -0.19
SHMT2-219ENST00000555563 ITIH2P19823 946 aa13.86□□□□□ -0.19
SHMT2-219ENST00000555563 HNRNPA2B1P22626 353 aaKnown RBP13.86□□□□□ -0.19
SHMT2-219ENST00000555563 SERPINA4P29622 427 aa13.86□□□□□ -0.19
SHMT2-219ENST00000555563 AKT2P31751 481 aa13.86□□□□□ -0.19
SHMT2-219ENST00000555563 MMP13P45452 471 aa13.86□□□□□ -0.19
SHMT2-219ENST00000555563 RENBPP51606 427 aa13.86□□□□□ -0.19
SHMT2-219ENST00000555563 AP1S1P61966 158 aa13.86□□□□□ -0.19
SHMT2-219ENST00000555563 IL9RQ01113 521 aa13.86□□□□□ -0.19
SHMT2-219ENST00000555563 STAT4Q14765 748 aa13.86□□□□□ -0.19
SHMT2-219ENST00000555563 ZNF423Q2M1K9 1284 aa13.86□□□□□ -0.19
SHMT2-219ENST00000555563 CFAP58Q5T655 872 aa13.86□□□□□ -0.19
SHMT2-219ENST00000555563 C11orf63Q6NUN7 778 aa13.86□□□□□ -0.19
SHMT2-219ENST00000555563 BRAT1Q6PJG6 821 aa13.86□□□□□ -0.19
SHMT2-219ENST00000555563 IQCHQ86VS3 1027 aa13.86□□□□□ -0.19
SHMT2-219ENST00000555563 ZSCAN30Q86W11 494 aa13.86□□□□□ -0.19
SHMT2-219ENST00000555563 NAXDQ8IW45 347 aa13.86□□□□□ -0.19
SHMT2-219ENST00000555563 ACRBPQ8NEB7 543 aa13.86□□□□□ -0.19
SHMT2-219ENST00000555563 FEM1CQ96JP0 617 aa13.86□□□□□ -0.19
SHMT2-219ENST00000555563 NSMCE3Q96MG7 304 aa13.86□□□□□ -0.19
SHMT2-219ENST00000555563 RNF157Q96PX1 679 aa13.86□□□□□ -0.19
SHMT2-219ENST00000555563 BAG1Q99933 345 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-219ENST00000555563 MGME1Q9BQP7 344 aa13.86□□□□□ -0.19
SHMT2-219ENST00000555563 SUV39H2Q9H5I1 410 aa13.86□□□□□ -0.19
SHMT2-219ENST00000555563 ATP13A3Q9H7F0 1226 aa13.86□□□□□ -0.19
SHMT2-219ENST00000555563 GDF3Q9NR23 364 aa13.86□□□□□ -0.19
SHMT2-219ENST00000555563 IMPACTQ9P2X3 320 aa13.86□□□□□ -0.19
SHMT2-219ENST00000555563 SALL4Q9UJQ4 1053 aa13.86□□□□□ -0.19
SHMT2-219ENST00000555563 LAMA1P25391 3075 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 TTC24A2A3L6 582 aaPredicted RBP13.85□□□□□ -0.19
SHMT2-219ENST00000555563 IGLON5A6NGN9 336 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 TLR4O00206 839 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 RAD51BO15315 384 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 PSTPIP1O43586 416 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 SH3BP5O60239 455 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 CEACAM1P13688 526 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 CR2P20023 1033 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 XPAP23025 273 aaPredicted RBP13.85□□□□□ -0.19
SHMT2-219ENST00000555563 HSPA9P38646 679 aaKnown RBP13.85□□□□□ -0.19
SHMT2-219ENST00000555563 CCT8P50990 548 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 SCNN1BP51168 640 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 CLDN2P57739 230 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 MAXP61244 160 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 BCL2L1Q07817 233 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 NSUN2Q08J23 767 aaKnown RBP eCLIP13.85□□□□□ -0.19
SHMT2-219ENST00000555563 OVGP1Q12889 678 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 UGP2Q16851 508 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 PRAMEF14Q5SWL7 426 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 MARC1Q5VT66 337 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 GCNT7Q6ZNI0 430 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 VSIG1Q86XK7 387 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 SPATS2Q86XZ4 545 aaKnown RBP13.85□□□□□ -0.19
SHMT2-219ENST00000555563 LRRC49Q8IUZ0 686 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 BBS5Q8N3I7 341 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 PLD5Q8N7P1 536 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 HCAR2Q8TDS4 363 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 LRRN4Q8WUT4 740 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 NSMCE1Q8WV22 266 aa13.85□□□□□ -0.19
SHMT2-219ENST00000555563 RNF25Q96BH1 459 aaPredicted RBP13.85□□□□□ -0.19
SHMT2-219ENST00000555563 ECHDC3Q96DC8 303 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms