RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 DKK3Q9UBP4 350 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 MAGED2Q9UNF1 606 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-207ENST00000553837 RNF11Q9Y3C5 154 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 Q9Y3F1 56 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 TRPV2Q9Y5S1 764 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 MRPL42Q9Y6G3 142 aaKnown RBP12.37□□□□□ -0.43
SHMT2-207ENST00000553837 PRSS51A0A1B0GVH4 220 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 H3BNH8 94 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 ZNF195O14628 629 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 PLIN3O60664 434 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 BMP10O95393 424 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 PGK1P00558 417 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 OCM2P0CE71 109 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 OCMP0CE72 109 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-207ENST00000553837 BRCC3P46736 316 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 LHX1P48742 406 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 PCLAFQ15004 111 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 UPP1Q16831 310 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 SMUG1Q53HV7 270 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 CERCAMQ5T4B2 595 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 TAF2Q6P1X5 1199 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 BNC2Q6ZN30 1099 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-207ENST00000553837 CMC1Q7Z7K0 106 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 DDHD1Q8NEL9 900 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 HM13Q8TCT9 377 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 ACMSDQ8TDX5 336 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 DPF3Q92784 378 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 MYLPFQ96A32 169 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 CERS2Q96G23 380 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 CDRT15Q96T59 188 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 OSBPL11Q9BXB4 747 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 RRAGCQ9HB90 399 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 TMEM216Q9P0N5 145 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 DCDC2Q9UHG0 476 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 SPO11Q9Y5K1 396 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 SHROOM3Q8TF72 1996 aa12.37□□□□□ -0.43
SHMT2-207ENST00000553837 ZCWPW2A0A1B0GU75 182 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 ARHGEF37A1IGU5 675 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 F8W810 466 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 AIM2O14862 343 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 NDUFB5O43674 189 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 KDM1AO60341 852 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 GLRA3O75311 464 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 CAPN15O75808 1086 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 AP2A1O95782 977 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 EIF2S1P05198 315 aaKnown RBP12.36□□□□□ -0.43
SHMT2-207ENST00000553837 C8BP07358 591 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 NFKBIAP25963 317 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 PGFP49763 221 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 NUDT2P50583 147 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 HUNKP57058 714 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 ABCE1P61221 599 aaKnown RBP12.36□□□□□ -0.43
SHMT2-207ENST00000553837 CAMK2BQ13554 666 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 GNASQ5JWF2 1037 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 ZNF362Q5T0B9 420 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-207ENST00000553837 ITPRIPL1Q6GPH6 555 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 TAC4Q86UU9 113 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 LRRTM3Q86VH5 581 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 RASAL3Q86YV0 1011 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 PLD6Q8N2A8 252 aaKnown RBP12.36□□□□□ -0.43
SHMT2-207ENST00000553837 TMEM86AQ8N2M4 240 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 ACVR1CQ8NER5 493 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 HASPINQ8TF76 798 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 EME1Q96AY2 570 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 PGAP3Q96FM1 320 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-207ENST00000553837 ATXN7L3BQ96GX2 97 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 CELF6Q96J87 481 aaKnown RBP12.36□□□□□ -0.43
SHMT2-207ENST00000553837 SORT1Q99523 831 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 SH3GL1Q99961 368 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 OSBPL10Q9BXB5 764 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 PAIP1Q9H074 479 aaKnown RBP12.36□□□□□ -0.43
SHMT2-207ENST00000553837 TKTL2Q9H0I9 626 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 CAAP1Q9H8G2 361 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 PNPLA3Q9NST1 481 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 SLC38A7Q9NVC3 462 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 UBP1Q9NZI7 540 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 OR12D3Q9UGF7 316 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 CDH9Q9ULB4 789 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 TSC22D4Q9Y3Q8 395 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 RGSL1A5PLK6 1076 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 SOBPA7XYQ1 873 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 CLASP2O75122 1294 aaKnown RBP12.36□□□□□ -0.43
SHMT2-207ENST00000553837 LRIG2O94898 1065 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 POMCP01189 267 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 POLBP06746 335 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 ZNF26P17031 533 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-207ENST00000553837 TPH1P17752 444 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 NFKB1P19838 968 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 BDNFP23560 247 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 HCAR3P49019 387 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 HARS2P49590 506 aaKnown RBP12.36□□□□□ -0.43
SHMT2-207ENST00000553837 CXCR3P49682 368 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 TMED10P49755 219 aaKnown RBP12.36□□□□□ -0.43
SHMT2-207ENST00000553837 BCAP31P51572 246 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 MGAT3Q09327 533 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 PIGGQ5H8A4 983 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 DEPDC1Q5TB30 811 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 VWA5B1Q5TIE3 1220 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 EPGNQ6UW88 154 aa12.36□□□□□ -0.43
SHMT2-207ENST00000553837 ARHGAP36Q6ZRI8 547 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms