RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 CRCPO75575 148 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 ANXA9O76027 345 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 GSRP00390 522 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 TPBGLP0DKB5 382 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 GFAPP14136 432 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 NELFEP18615 380 aaKnown RBP5.64□□□□□ -1.51
LIMA1-215ENST00000552823 TFEBP19484 476 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 HADHAP40939 763 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 PIK3CGP48736 1102 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 NPY2RP49146 381 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 SERPINH1P50454 418 aaKnown RBP5.64□□□□□ -1.51
LIMA1-215ENST00000552823 GEMP55040 296 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 CREB5Q02930 508 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 SEMA3BQ13214 749 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 MAPRE1Q15691 268 aaKnown RBP5.64□□□□□ -1.51
LIMA1-215ENST00000552823 NFE2Q16621 373 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-215ENST00000552823 ZRANB3Q5FWF4 1079 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 RAB41Q5JT25 222 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 CYP2R1Q6VVX0 501 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 KYAT3Q6YP21 454 aaKnown RBP5.64□□□□□ -1.51
LIMA1-215ENST00000552823 GK5Q6ZS86 529 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 FRMD7Q6ZUT3 714 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 ULK2Q8IYT8 1036 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 RTL3Q8N8U3 475 aaKnown RBP5.64□□□□□ -1.51
LIMA1-215ENST00000552823 OR9I1Q8NGQ6 314 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 BCL7CQ8WUZ0 217 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-215ENST00000552823 SKA2Q8WVK7 121 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-215ENST00000552823 ANKRD49Q8WVL7 239 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 SCG3Q8WXD2 468 aaKnown RBP5.64□□□□□ -1.51
LIMA1-215ENST00000552823 RCN3Q96D15 328 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 CDRT15Q96T59 188 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 SORT1Q99523 831 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 SLC39A3Q9BRY0 314 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 ZYG11BQ9C0D3 744 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 NOL6Q9H6R4 1146 aaKnown RBP5.64□□□□□ -1.51
LIMA1-215ENST00000552823 ATP13A1Q9HD20 1204 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 KCNK4Q9NYG8 393 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 SLC7A8Q9UHI5 535 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 TRHDEQ9UKU6 1024 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 SOX13Q9UN79 622 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 ATXN2Q99700 1313 aaKnown RBP5.64□□□□□ -1.51
LIMA1-215ENST00000552823 MTMR11A4FU01 709 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 C2orf78A6NCI8 922 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 F5H5T6 163 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 K7ERQ8 282 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 ZNF623O75123 536 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 SH3BGRLO75368 114 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 PSMG1O95456 288 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 MBL2P11226 248 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-215ENST00000552823 KCNC1P48547 511 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 RAB27AP51159 221 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 SGSHP51688 502 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 COPAP53621 1224 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 INHBEP58166 350 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 ART3Q13508 389 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 PCBP1Q15365 356 aaKnown RBP eCLIP5.64□□□□□ -1.51
LIMA1-215ENST00000552823 PFKFB4Q16877 469 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 LSM12Q3MHD2 195 aaKnown RBP5.64□□□□□ -1.51
LIMA1-215ENST00000552823 SGO1Q5FBB7 561 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 ZNF697Q5TEC3 545 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 TXNDC8Q6A555 127 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 PM20D1Q6GTS8 502 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 OTOP2Q7RTS6 562 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 COLGALT2Q8IYK4 626 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 ATP6V0D2Q8N8Y2 350 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 PPFIBP2Q8ND30 876 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 OR4K2Q8NGD2 314 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 NUDT8Q8WV74 236 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 NAF1Q96HR8 494 aaKnown RBP5.64□□□□□ -1.51
LIMA1-215ENST00000552823 KCNA7Q96RP8 456 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 NCKIPSDQ9NZQ3 722 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 RCOR3Q9P2K3 495 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-215ENST00000552823 PPM1HQ9ULR3 514 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 FCF1Q9Y324 198 aaKnown RBP5.64□□□□□ -1.51
LIMA1-215ENST00000552823 TCAF1Q9Y4C2 921 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 TIMM22Q9Y584 194 aa5.64□□□□□ -1.51
LIMA1-215ENST00000552823 NVLO15381 856 aaKnown RBP5.63□□□□□ -1.51
LIMA1-215ENST00000552823 NCAM2O15394 837 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 TIMM44O43615 452 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 RHOBTB1O94844 696 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 GUCA1CO95843 209 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 SLC35E2BP0CK96 405 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 MLNP12872 115 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 CHRM3P20309 590 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 TBL3Q12788 808 aaKnown RBP5.63□□□□□ -1.51
LIMA1-215ENST00000552823 RALGDSQ12967 914 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 TSTA3Q13630 321 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-215ENST00000552823 DSC3Q14574 896 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 TRIP10Q15642 601 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 KIF19Q2TAC6 998 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 SIRPB2Q5JXA9 342 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 DENND5AQ6IQ26 1287 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 LRRC8EQ6NSJ5 796 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 C4orf22Q6V702 233 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 MRPL10Q7Z7H8 261 aaKnown RBP5.63□□□□□ -1.51
LIMA1-215ENST00000552823 TMEM135Q86UB9 458 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 SPATA24Q86W54 205 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 PGBD5Q8N414 524 aa5.63□□□□□ -1.51
LIMA1-215ENST00000552823 TXNDC5Q8NBS9 432 aaKnown RBP5.63□□□□□ -1.51
LIMA1-215ENST00000552823 FBXO22Q8NEZ5 403 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms