RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 CRYBB1P53674 252 aaPredicted RBP7.57□□□□□ -1.2
LIMA1-213ENST00000552720 MAXP61244 160 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 SULT2A1Q06520 285 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 CCL14Q16627 93 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 NRF1Q16656 503 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 INTS6LQ5JSJ4 861 aaKnown RBP7.57□□□□□ -1.2
LIMA1-213ENST00000552720 MAP3K21Q5TCX8 1036 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 DCLRE1AQ6PJP8 1040 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 LAYNQ6UX15 382 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 TICAM1Q8IUC6 712 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 PIP4P2Q8N4L2 257 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 MARVELD2Q8N4S9 558 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 ATPAF2Q8N5M1 289 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 OR9I1Q8NGQ6 314 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 FAM110BQ8TC76 370 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 NCSTNQ92542 709 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 SMARCD1Q96GM5 515 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 BTBD9Q96Q07 612 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 VAT1Q99536 393 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 SERPINI1Q99574 410 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 EFCAB1Q9HAE3 211 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 GLOD4Q9HC38 313 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 ADA2Q9NZK5 511 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 PRSS51A0A1B0GVH4 220 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 ATP6AP2A0A1C7CYW4 349 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 E7ENX8 843 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 FBP2O00757 339 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 CLGNO14967 610 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 DENRO43583 198 aaKnown RBP7.57□□□□□ -1.2
LIMA1-213ENST00000552720 CACNG3O60359 315 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 ATP6AP2O75787 350 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 CDC42EP1Q00587 391 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 IHHQ14623 411 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 ARTNQ5T4W7 220 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 LINC00523Q86TU6 105 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 LRRTM3Q86VH5 581 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 CNTN4Q8IWV2 1026 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 PPHLN1Q8NEY8 458 aaKnown RBP7.57□□□□□ -1.2
LIMA1-213ENST00000552720 PIP4K2CQ8TBX8 421 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 ANKRD49Q8WVL7 239 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 PHF21BQ96EK2 531 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 DNAJC1Q96KC8 554 aaKnown RBP7.57□□□□□ -1.2
LIMA1-213ENST00000552720 MRGPRX2Q96LB1 330 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 HAPLN3Q96S86 360 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 PRPF18Q99633 342 aaKnown RBP7.57□□□□□ -1.2
LIMA1-213ENST00000552720 SLC39A3Q9BRY0 314 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 CCDC28BQ9BUN5 200 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 GRIP2Q9C0E4 1043 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 MRPL46Q9H2W6 279 aaKnown RBP7.57□□□□□ -1.2
LIMA1-213ENST00000552720 DMAP1Q9NPF5 467 aaPredicted RBP7.57□□□□□ -1.2
LIMA1-213ENST00000552720 IGSF5Q9NSI5 407 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 CCDC167Q9P0B6 97 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 MID2Q9UJV3 735 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 FBXO5Q9UKT4 447 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 LZTS1Q9Y250 596 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 TCAF1Q9Y4C2 921 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 PCDHGA7Q9Y5G6 932 aa7.57□□□□□ -1.2
LIMA1-213ENST00000552720 COL4A4P53420 1690 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-213ENST00000552720 PAGE1O75459 146 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 BCAS2O75934 225 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-213ENST00000552720 RTN3O95197 1032 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-213ENST00000552720 F9P00740 461 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 POMCP01189 267 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 THP07101 528 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 CPB1P15086 417 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 ADRA1AP35348 466 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 KCNC1P48547 511 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 LHX1P48742 406 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 PTK2BQ14289 1009 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 PCBP1Q15365 356 aaKnown RBP eCLIP7.56□□□□□ -1.2
LIMA1-213ENST00000552720 SLC5A9Q2M3M2 681 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 NADK2Q4G0N4 442 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 PITRM1Q5JRX3 1037 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 RARS2Q5T160 578 aaKnown RBP7.56□□□□□ -1.2
LIMA1-213ENST00000552720 BTBD8Q5XKL5 378 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 CLEC6AQ6EIG7 209 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 CYP2R1Q6VVX0 501 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 RBM44Q6ZP01 1051 aaKnown RBP7.56□□□□□ -1.2
LIMA1-213ENST00000552720 PLEKHH3Q7Z736 793 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 C14orf80Q86SX3 495 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 PELI3Q8N2H9 469 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 ARHGAP18Q8N392 663 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 TMEM102Q8N9M5 508 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-213ENST00000552720 SPPL2BQ8TCT7 592 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 PDCD6IPQ8WUM4 868 aaKnown RBP7.56□□□□□ -1.2
LIMA1-213ENST00000552720 CASP10Q92851 521 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 SLC45A3Q96JT2 553 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 MAELQ96JY0 434 aaKnown RBP7.56□□□□□ -1.2
LIMA1-213ENST00000552720 PRICKLE1Q96MT3 831 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-213ENST00000552720 FCRL5Q96RD9 977 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 IL12RB2Q99665 862 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 PTPN18Q99952 460 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 FSD1LQ9BXM9 530 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 UBE2OQ9C0C9 1292 aaKnown RBP7.56□□□□□ -1.2
LIMA1-213ENST00000552720 FBRSL1Q9HCM7 1045 aaKnown RBP7.56□□□□□ -1.2
LIMA1-213ENST00000552720 TRPC7Q9HCX4 862 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 TREX1Q9NSU2 369 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 FAM105AQ9NUU6 356 aa7.56□□□□□ -1.2
LIMA1-213ENST00000552720 RBM22Q9NW64 420 aaKnown RBP eCLIP7.56□□□□□ -1.2
LIMA1-213ENST00000552720 VTI1BQ9UEU0 232 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms