RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 TMEM145Q8NBT3 493 aa11.96□□□□□ -0.49
HDAC4-216ENST00000544989 KCTD6Q8NC69 237 aa11.96□□□□□ -0.49
HDAC4-216ENST00000544989 DENND6BQ8NEG7 585 aa11.96□□□□□ -0.49
HDAC4-216ENST00000544989 FAM71BQ8TC56 605 aa11.96□□□□□ -0.49
HDAC4-216ENST00000544989 RHBDD1Q8TEB9 315 aa11.96□□□□□ -0.49
HDAC4-216ENST00000544989 IFT43Q96FT9 208 aa11.96□□□□□ -0.49
HDAC4-216ENST00000544989 KLHDC7BQ96G42 594 aa11.96□□□□□ -0.49
HDAC4-216ENST00000544989 KLHL32Q96NJ5 620 aa11.96□□□□□ -0.49
HDAC4-216ENST00000544989 LENG8Q96PV6 779 aaPredicted RBP11.96□□□□□ -0.49
HDAC4-216ENST00000544989 ZNF670Q9BS34 389 aa11.96□□□□□ -0.49
HDAC4-216ENST00000544989 SLC17A9Q9BYT1 436 aa11.96□□□□□ -0.49
HDAC4-216ENST00000544989 KLC2Q9H0B6 622 aa11.96□□□□□ -0.49
HDAC4-216ENST00000544989 IL21RQ9HBE5 538 aa11.96□□□□□ -0.49
HDAC4-216ENST00000544989 PCDH18Q9HCL0 1135 aa11.96□□□□□ -0.49
HDAC4-216ENST00000544989 LHX3Q9UBR4 397 aa11.96□□□□□ -0.49
HDAC4-216ENST00000544989 IPO11Q9UI26 975 aaKnown RBP11.96□□□□□ -0.49
HDAC4-216ENST00000544989 PCOLCE2Q9UKZ9 415 aa11.96□□□□□ -0.49
HDAC4-216ENST00000544989 APOBEC2Q9Y235 224 aaKnown RBP11.96□□□□□ -0.49
HDAC4-216ENST00000544989 ACTL7AQ9Y615 435 aa11.96□□□□□ -0.49
HDAC4-216ENST00000544989 SLCO1B1Q9Y6L6 691 aa11.96□□□□□ -0.49
HDAC4-216ENST00000544989 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.95□□□□□ -0.5
HDAC4-216ENST00000544989 A0A1W2PQ67 120 aa11.95□□□□□ -0.5
HDAC4-216ENST00000544989 A6NNZ2 444 aa11.95□□□□□ -0.5
HDAC4-216ENST00000544989 J3KR12 359 aa11.95□□□□□ -0.5
HDAC4-216ENST00000544989 TOR1BO14657 336 aa11.95□□□□□ -0.5
HDAC4-216ENST00000544989 GIPC1O14908 333 aa11.95□□□□□ -0.5
HDAC4-216ENST00000544989 SLC31A1O15431 190 aa11.95□□□□□ -0.5
HDAC4-216ENST00000544989 CBFA2T3O75081 653 aa11.95□□□□□ -0.5
HDAC4-216ENST00000544989 WNT1P04628 370 aa11.95□□□□□ -0.5
HDAC4-216ENST00000544989 SERPINA4P29622 427 aa11.95□□□□□ -0.5
HDAC4-216ENST00000544989 AP1S1P61966 158 aa11.95□□□□□ -0.5
HDAC4-216ENST00000544989 POLR2LP62875 67 aaKnown RBP11.95□□□□□ -0.5
HDAC4-216ENST00000544989 TBX2Q13207 712 aaPredicted RBP11.95□□□□□ -0.5
HDAC4-216ENST00000544989 ZNF235Q14590 738 aa11.95□□□□□ -0.5
HDAC4-216ENST00000544989 ERAP2Q6P179 960 aa11.95□□□□□ -0.5
HDAC4-216ENST00000544989 LAYNQ6UX15 382 aa11.95□□□□□ -0.5
HDAC4-216ENST00000544989 VSIG1Q86XK7 387 aa11.95□□□□□ -0.5
HDAC4-216ENST00000544989 CCDC170Q8IYT3 715 aa11.95□□□□□ -0.5
HDAC4-216ENST00000544989 ATPAF2Q8N5M1 289 aa11.95□□□□□ -0.5
HDAC4-216ENST00000544989 OR6K2Q8NGY2 324 aa11.95□□□□□ -0.5
HDAC4-216ENST00000544989 CXorf40AQ8TE69 158 aa11.95□□□□□ -0.5
HDAC4-216ENST00000544989 RFFLQ8WZ73 363 aa11.95□□□□□ -0.5
HDAC4-216ENST00000544989 TSC1Q92574 1164 aa11.95□□□□□ -0.5
HDAC4-216ENST00000544989 MRFAP1L1Q96HT8 127 aa11.95□□□□□ -0.5
HDAC4-216ENST00000544989 BTBD6Q96KE9 485 aa11.95□□□□□ -0.5
HDAC4-216ENST00000544989 PSKH2Q96QS6 385 aa11.95□□□□□ -0.5
HDAC4-216ENST00000544989 C1QTNF2Q9BXJ5 285 aa11.95□□□□□ -0.5
HDAC4-216ENST00000544989 SUV39H2Q9H5I1 410 aa11.95□□□□□ -0.5
HDAC4-216ENST00000544989 TRPM6Q9BX84 2022 aa11.94□□□□□ -0.5
HDAC4-216ENST00000544989 HELZ2Q9BYK8 2649 aaKnown RBP11.94□□□□□ -0.5
HDAC4-216ENST00000544989 TSPAN11A1L157 253 aa11.94□□□□□ -0.5
HDAC4-216ENST00000544989 ZNF487B1APH4 448 aa11.94□□□□□ -0.5
HDAC4-216ENST00000544989 FPGTO14772 594 aa11.94□□□□□ -0.5
HDAC4-216ENST00000544989 AREL1O15033 823 aa11.94□□□□□ -0.5
HDAC4-216ENST00000544989 MTA2O94776 668 aa11.94□□□□□ -0.5
HDAC4-216ENST00000544989 ITGAVP06756 1048 aa11.94□□□□□ -0.5
HDAC4-216ENST00000544989 THEGLP0DJG4 465 aa11.94□□□□□ -0.5
HDAC4-216ENST00000544989 CDK4P11802 303 aa11.94□□□□□ -0.5
HDAC4-216ENST00000544989 TCF4P15884 667 aa11.94□□□□□ -0.5
HDAC4-216ENST00000544989 MX2P20592 715 aa11.94□□□□□ -0.5
HDAC4-216ENST00000544989 AMPD1P23109 780 aa11.94□□□□□ -0.5
HDAC4-216ENST00000544989 CES1P23141 567 aa11.94□□□□□ -0.5
HDAC4-216ENST00000544989 GKP32189 559 aa11.94□□□□□ -0.5
HDAC4-216ENST00000544989 SLC1A1P43005 524 aa11.94□□□□□ -0.5
HDAC4-216ENST00000544989 RABIFP47224 123 aa11.94□□□□□ -0.5
HDAC4-216ENST00000544989 BCL2L1Q07817 233 aa11.94□□□□□ -0.5
HDAC4-216ENST00000544989 LBRQ14739 615 aaKnown RBP11.94□□□□□ -0.5
HDAC4-216ENST00000544989 TCEAL1Q15170 157 aa11.94□□□□□ -0.5
HDAC4-216ENST00000544989 HS1BP3Q53T59 392 aa11.94□□□□□ -0.5
HDAC4-216ENST00000544989 ZFYVE27Q5T4F4 411 aa11.94□□□□□ -0.5
HDAC4-216ENST00000544989 TIGD7Q6NT04 549 aaPredicted RBP11.94□□□□□ -0.5
HDAC4-216ENST00000544989 KYAT3Q6YP21 454 aaKnown RBP11.94□□□□□ -0.5
HDAC4-216ENST00000544989 ABI3BPQ7Z7G0 1075 aa11.94□□□□□ -0.5
HDAC4-216ENST00000544989 SRLQ86TD4 932 aa11.94□□□□□ -0.5
HDAC4-216ENST00000544989 NPWQ8N729 165 aa11.94□□□□□ -0.5
HDAC4-216ENST00000544989 SLC35G2Q8TBE7 412 aa11.94□□□□□ -0.5
HDAC4-216ENST00000544989 CALR3Q96L12 384 aaKnown RBP11.94□□□□□ -0.5
HDAC4-216ENST00000544989 CALN1Q9BXU9 219 aa11.94□□□□□ -0.5
HDAC4-216ENST00000544989 KLHL11Q9NVR0 708 aa11.94□□□□□ -0.5
HDAC4-216ENST00000544989 ZFR2Q9UPR6 939 aaKnown RBP11.94□□□□□ -0.5
HDAC4-216ENST00000544989 ASH1LQ9NR48 2969 aaKnown RBP11.94□□□□□ -0.5
HDAC4-216ENST00000544989 PLXNA2O75051 1894 aa11.93□□□□□ -0.5
HDAC4-216ENST00000544989 LOC400499M0QZD8 3231 aa11.93□□□□□ -0.5
HDAC4-216ENST00000544989 CFAP69A5D8W1 941 aa11.93□□□□□ -0.5
HDAC4-216ENST00000544989 IGLON5A6NGN9 336 aa11.93□□□□□ -0.5
HDAC4-216ENST00000544989 RIOK3O14730 519 aaKnown RBP11.93□□□□□ -0.5
HDAC4-216ENST00000544989 TNFSF14O43557 240 aa11.93□□□□□ -0.5
HDAC4-216ENST00000544989 TM7SF2O76062 418 aa11.93□□□□□ -0.5
HDAC4-216ENST00000544989 IPO7O95373 1038 aaKnown RBP11.93□□□□□ -0.5
HDAC4-216ENST00000544989 PRLRP16471 622 aa11.93□□□□□ -0.5
HDAC4-216ENST00000544989 EPHA8P29322 1005 aaPredicted RBP11.93□□□□□ -0.5
HDAC4-216ENST00000544989 CYLC1P35663 651 aaPredicted RBP11.93□□□□□ -0.5
HDAC4-216ENST00000544989 ABL2P42684 1182 aa11.93□□□□□ -0.5
HDAC4-216ENST00000544989 DPYSL3Q14195 570 aa11.93□□□□□ -0.5
HDAC4-216ENST00000544989 SPA17Q15506 151 aa11.93□□□□□ -0.5
HDAC4-216ENST00000544989 UGP2Q16851 508 aa11.93□□□□□ -0.5
HDAC4-216ENST00000544989 TMEM52BQ4KMG9 183 aa11.93□□□□□ -0.5
HDAC4-216ENST00000544989 ODF2Q5BJF6 829 aa11.93□□□□□ -0.5
HDAC4-216ENST00000544989 LRRC38Q5VT99 294 aa11.93□□□□□ -0.5
HDAC4-216ENST00000544989 SEL1L3Q68CR1 1132 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms