RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 USP45Q70EL2 814 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 CCDC80Q76M96 950 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 GALNT4Q8N4A0 578 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 SLC25A41Q8N5S1 370 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 FOXJ1Q92949 421 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 CD101Q93033 1021 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 ITCHQ96J02 903 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 MPP4Q96JB8 637 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 C7orf26Q96N11 449 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 TEFMQ96QE5 360 aaKnown RBP7.88□□□□□ -1.15
VPS13D-211ENST00000543710 THUMPD3Q9BV44 507 aaKnown RBP7.88□□□□□ -1.15
VPS13D-211ENST00000543710 TRIT1Q9H3H1 467 aaKnown RBP7.88□□□□□ -1.15
VPS13D-211ENST00000543710 PRDM12Q9H4Q4 367 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 LATS2Q9NRM7 1088 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 CISHQ9NSE2 258 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 TRIM10Q9UDY6 481 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 C9J4A7 227 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 MRASO14807 208 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 SIN3BO75182 1162 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 SRPRAP08240 638 aaKnown RBP7.88□□□□□ -1.15
VPS13D-211ENST00000543710 ATP5F1P24539 256 aaPredicted RBP7.88□□□□□ -1.15
VPS13D-211ENST00000543710 NRIP1P48552 1158 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 TTPAP49638 278 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 BLVRAP53004 296 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 RPS6P62753 249 aaKnown RBP7.88□□□□□ -1.15
VPS13D-211ENST00000543710 CACNB2Q08289 660 aaPredicted RBP7.88□□□□□ -1.15
VPS13D-211ENST00000543710 SIM2Q14190 667 aaPredicted RBP7.88□□□□□ -1.15
VPS13D-211ENST00000543710 ZC2HC1CQ53FD0 456 aaPredicted RBP7.88□□□□□ -1.15
VPS13D-211ENST00000543710 TCHHL1Q5QJ38 904 aaPredicted RBP7.88□□□□□ -1.15
VPS13D-211ENST00000543710 OVOS1Q6IE37 1185 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 SLC36A4Q6YBV0 504 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 FAM220AQ7Z4H9 259 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 FAM228AQ86W67 206 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 CLYBLQ8N0X4 340 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 MIEF2Q96C03 454 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 ROPN1LQ96C74 230 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 SFXN1Q9H9B4 322 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 SLC2A4RGQ9NR83 387 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 C2CD2Q9Y426 696 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 BCL9O00512 1426 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 RGSL1A5PLK6 1076 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 ABCB1P08183 1280 aaPredicted RBP7.88□□□□□ -1.15
VPS13D-211ENST00000543710 ATP4AP20648 1035 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 SLC26A3P40879 764 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 SLC18A1P54219 525 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 FCHO2Q0JRZ9 810 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 TRAP1Q12931 704 aaKnown RBP7.88□□□□□ -1.15
VPS13D-211ENST00000543710 PTPN21Q16825 1174 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 LSM12Q3MHD2 195 aaKnown RBP7.88□□□□□ -1.15
VPS13D-211ENST00000543710 LIPMQ5VYY2 423 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 NAIF1Q69YI7 327 aaPredicted RBP7.88□□□□□ -1.15
VPS13D-211ENST00000543710 SLC24A5Q71RS6 500 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 DHDDSQ86SQ9 333 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 ZNF276Q8N554 614 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 DPP10Q8N608 796 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 C2orf15Q8WU43 125 aaKnown RBP7.88□□□□□ -1.15
VPS13D-211ENST00000543710 BORCS5Q969J3 196 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 SLC38A2Q96QD8 506 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 TAAR1Q96RJ0 339 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 ELOVL6Q9H5J4 265 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 POMKQ9H5K3 350 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 CACNB4O00305 520 aaPredicted RBP7.88□□□□□ -1.15
VPS13D-211ENST00000543710 KDELR1P24390 212 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 RPL5P46777 297 aaKnown RBP7.88□□□□□ -1.15
VPS13D-211ENST00000543710 ACTR3P61158 418 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 ARHGAP8P85298 464 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 RGS21Q2M5E4 152 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 FBXO47Q5MNV8 452 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 EXOC3L1Q86VI1 746 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 STAG3L4Q8TBR4 150 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 TCF12Q99081 682 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 HHATLQ9HCP6 504 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 IFT80Q9P2H3 777 aaPredicted RBP7.88□□□□□ -1.15
VPS13D-211ENST00000543710 GULP1Q9UBP9 304 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 Q9Y3F1 56 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 SNX13Q9Y5W8 968 aa7.88□□□□□ -1.15
VPS13D-211ENST00000543710 A0A087WWV3 80 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 A0A087X0T9 212 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 TEX28O15482 410 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 MGRN1O60291 552 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 UBOX5O94941 541 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 SERPINF2P08697 491 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 FAM228BP0C875 321 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 ZNF24P17028 368 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 CRHR1P34998 444 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 RGS7P49802 495 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 DLG1Q12959 904 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 PGS1Q32NB8 556 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 MDH1BQ5I0G3 518 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 EMC10Q5UCC4 262 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 DUS1LQ6P1R4 473 aaKnown RBP7.87□□□□□ -1.15
VPS13D-211ENST00000543710 OR2W6PQ8NHA6 318 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 ITFG1Q8TB96 612 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 RASSF5Q8WWW0 418 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 FCGR1BQ92637 280 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 LENG1Q96BZ8 264 aaPredicted RBP7.87□□□□□ -1.15
VPS13D-211ENST00000543710 POLR1EQ9GZS1 481 aaKnown RBP7.87□□□□□ -1.15
VPS13D-211ENST00000543710 CDH19Q9H159 772 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 ST6GALNAC4Q9H4F1 302 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 MLXIPLQ9NP71 852 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms