RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 MAPRE2Q15555 327 aa8.09□□□□□ -1.11
PDLIM5-221ENST00000542407 ADRM1Q16186 407 aa8.09□□□□□ -1.11
PDLIM5-221ENST00000542407 FBXO43Q4G163 708 aa8.09□□□□□ -1.11
PDLIM5-221ENST00000542407 KCNT1Q5JUK3 1230 aa8.09□□□□□ -1.11
PDLIM5-221ENST00000542407 METTL2BQ6P1Q9 378 aaKnown RBP8.09□□□□□ -1.11
PDLIM5-221ENST00000542407 UGT2A3Q6UWM9 527 aa8.09□□□□□ -1.11
PDLIM5-221ENST00000542407 PAQR9Q6ZVX9 377 aa8.09□□□□□ -1.11
PDLIM5-221ENST00000542407 TMC7Q7Z402 723 aa8.09□□□□□ -1.11
PDLIM5-221ENST00000542407 GRK7Q8WTQ7 553 aa8.09□□□□□ -1.11
PDLIM5-221ENST00000542407 RXFP2Q8WXD0 754 aa8.09□□□□□ -1.11
PDLIM5-221ENST00000542407 TSNARE1Q96NA8 513 aa8.09□□□□□ -1.11
PDLIM5-221ENST00000542407 GAD1Q99259 594 aa8.09□□□□□ -1.11
PDLIM5-221ENST00000542407 CNPY3Q9BT09 278 aa8.09□□□□□ -1.11
PDLIM5-221ENST00000542407 TRMT13Q9NUP7 481 aaKnown RBP8.09□□□□□ -1.11
PDLIM5-221ENST00000542407 PADI3Q9ULW8 664 aa8.09□□□□□ -1.11
PDLIM5-221ENST00000542407 HBS1LQ9Y450 684 aaKnown RBP8.09□□□□□ -1.11
PDLIM5-221ENST00000542407 A6NJY4 79 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 GPR182O15218 404 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 TYROBPO43914 113 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 ZNF623O75123 536 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 BANF1O75531 89 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 TOMM70O94826 608 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 SORBS2O94875 1100 aaKnown RBP8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 RETP07949 1114 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 KRT7P08729 469 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 BCAT1P54687 386 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 SLC25A3Q00325 362 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 GUCA2AQ02747 115 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 MLLT1Q03111 559 aaPredicted RBP8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 GALNT1Q10472 559 aaPredicted RBP8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 BST2Q10589 180 aaKnown RBP8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 HNRNPDQ14103 355 aaKnown RBP8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 GRM2Q14416 872 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 EFTUD2Q15029 972 aaKnown RBP eCLIP8.08□□□□□ -1.125e-8■□□□□ 11.1
PDLIM5-221ENST00000542407 SF3B4Q15427 424 aaKnown RBP eCLIP8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 DEFB115Q30KQ5 88 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 CLVS2Q5SYC1 327 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 OR6B2Q6IFH4 312 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 C4orf22Q6V702 233 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 TAB3Q8N5C8 712 aaPredicted RBP8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 ZNF565Q8N9K5 539 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 GLIS1Q8NBF1 620 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 SLC35B2Q8TB61 432 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 CLEC4CQ8WTT0 213 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 SECISBP2Q96T21 854 aaKnown RBP8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 B3GNT5Q9BYG0 378 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 KCNK13Q9HB14 408 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 CYP4F11Q9HBI6 524 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 ARHGEF4Q9NR80 690 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 SDHAF3Q9NRP4 125 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 DNPEPQ9ULA0 475 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 RNF112Q9ULX5 631 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 USP18Q9UMW8 372 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 SLC8A2Q9UPR5 921 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 MRPS23Q9Y3D9 190 aaKnown RBP8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 FKBP6O75344 327 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 GRAP2O75791 330 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 ZSCAN5DPP0CG00 497 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 PTGS2P35354 604 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 MASP1P48740 699 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 ACLYP53396 1101 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 RAC1P63000 192 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 MRPL58Q14197 206 aaKnown RBP8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 TLR1Q15399 786 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 SHEQ5VZ18 495 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 WSCD1Q658N2 575 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 LHX8Q68G74 356 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 CD300LGQ6UXG3 332 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 BBS12Q6ZW61 710 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 ZDHHC17Q8IUH5 632 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 SCUBE3Q8IX30 993 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 NUP93Q8N1F7 819 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 ALLCQ8N6M5 410 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 PCSK9Q8NBP7 692 aaKnown RBP8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 B3GALNT2Q8NCR0 500 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 SPATA18Q8TC71 538 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 SLC2A14Q8TDB8 520 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 NKD2Q969F2 451 aaPredicted RBP8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 DHRS9Q9BPW9 319 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 PAAF1Q9BRP4 392 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 APOL5Q9BWW9 433 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 CAPN10Q9HC96 672 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 SLC38A7Q9NVC3 462 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 ASNSD1Q9NWL6 643 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 SENP1Q9P0U3 644 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 DMTF1Q9Y222 760 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 SPEF1Q9Y4P9 236 aa8.08□□□□□ -1.12
PDLIM5-221ENST00000542407 CYB561D2O14569 222 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 HUS1O60921 280 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 CHEK2O96017 543 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 DLDP09622 509 aaKnown RBP8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 RAG1P15918 1043 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 PDGFRAP16234 1089 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 TFE3P19532 575 aaPredicted RBP8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 ADORA2BP29275 332 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 CSTF2P33240 577 aaKnown RBP eCLIP8.07□□□□□ -1.122e-6■■□□□ 13.9
PDLIM5-221ENST00000542407 SEPHS1P49903 392 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 SCNN1GP51170 649 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 CLCNKBP51801 687 aa8.07□□□□□ -1.12
PDLIM5-221ENST00000542407 C21orf58P58505 322 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms