RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 PTP4A2Q12974 167 aa15.67■□□□□ 0.1
CLSTN3-213ENST00000541953 MYLK3Q32MK0 819 aa15.67■□□□□ 0.1
CLSTN3-213ENST00000541953 C6orf132Q5T0Z8 1188 aa15.67■□□□□ 0.1
CLSTN3-213ENST00000541953 IGF2-ASQ6U949 168 aa15.67■□□□□ 0.1
CLSTN3-213ENST00000541953 RBM44Q6ZP01 1051 aaKnown RBP15.67■□□□□ 0.1
CLSTN3-213ENST00000541953 SFTPA2Q8IWL1 248 aa15.67■□□□□ 0.1
CLSTN3-213ENST00000541953 PLPP6Q8IY26 295 aa15.67■□□□□ 0.1
CLSTN3-213ENST00000541953 MLKLQ8NB16 471 aa15.67■□□□□ 0.1
CLSTN3-213ENST00000541953 KYQ8NBH2 561 aa15.67■□□□□ 0.1
CLSTN3-213ENST00000541953 SNRNP27Q8WVK2 155 aaKnown RBP15.67■□□□□ 0.1
CLSTN3-213ENST00000541953 EXOC2Q96KP1 924 aa15.67■□□□□ 0.1
CLSTN3-213ENST00000541953 PCDHB18PQ96TA0 734 aa15.67■□□□□ 0.1
CLSTN3-213ENST00000541953 IL12RB2Q99665 862 aa15.67■□□□□ 0.1
CLSTN3-213ENST00000541953 C11orf70Q9BRQ4 267 aa15.67■□□□□ 0.1
CLSTN3-213ENST00000541953 SYNDIG1Q9H7V2 258 aa15.67■□□□□ 0.1
CLSTN3-213ENST00000541953 COL12A1Q99715 3063 aa15.66■□□□□ 0.1
CLSTN3-213ENST00000541953 LMO7DNF2Z398 122 aa15.66■□□□□ 0.1
CLSTN3-213ENST00000541953 TPP1O14773 563 aa15.66■□□□□ 0.1
CLSTN3-213ENST00000541953 EFSO43281 561 aa15.66■□□□□ 0.1
CLSTN3-213ENST00000541953 GFPT2O94808 682 aa15.66■□□□□ 0.1
CLSTN3-213ENST00000541953 PIGNO95427 931 aa15.66■□□□□ 0.1
CLSTN3-213ENST00000541953 CYP1A1P04798 512 aaPredicted RBP15.66■□□□□ 0.1
CLSTN3-213ENST00000541953 TIMP2P16035 220 aa15.66■□□□□ 0.1
CLSTN3-213ENST00000541953 MMP8P22894 467 aa15.66■□□□□ 0.1
CLSTN3-213ENST00000541953 MAPKAPK2P49137 400 aa15.66■□□□□ 0.1
CLSTN3-213ENST00000541953 RHDQ02161 417 aa15.66■□□□□ 0.1
CLSTN3-213ENST00000541953 VAC14Q08AM6 782 aa15.66■□□□□ 0.1
CLSTN3-213ENST00000541953 CLN3Q13286 438 aa15.66■□□□□ 0.1
CLSTN3-213ENST00000541953 IRF4Q15306 451 aa15.66■□□□□ 0.1
CLSTN3-213ENST00000541953 TPD52L1Q16890 204 aaPredicted RBP15.66■□□□□ 0.1
CLSTN3-213ENST00000541953 KLHL40Q2TBA0 621 aa15.66■□□□□ 0.1
CLSTN3-213ENST00000541953 BROXQ5VW32 411 aa15.66■□□□□ 0.1
CLSTN3-213ENST00000541953 ARCQ7LC44 396 aa15.66■□□□□ 0.1
CLSTN3-213ENST00000541953 ASB12Q8WXK4 309 aa15.66■□□□□ 0.1
CLSTN3-213ENST00000541953 RAB7BQ96AH8 199 aa15.66■□□□□ 0.1
CLSTN3-213ENST00000541953 EPAS1Q99814 870 aa15.66■□□□□ 0.1
CLSTN3-213ENST00000541953 TAB2Q9NYJ8 693 aa15.66■□□□□ 0.1
CLSTN3-213ENST00000541953 SIRPGQ9P1W8 387 aa15.66■□□□□ 0.1
CLSTN3-213ENST00000541953 SPASTQ9UBP0 616 aa15.66■□□□□ 0.1
CLSTN3-213ENST00000541953 SPENQ96T58 3664 aaKnown RBP15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 PES1O00541 588 aaKnown RBP15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 NTN3O00634 580 aaPredicted RBP15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 RAMP2O60895 175 aa15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 TNFSF15O95150 251 aa15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 PRKCGP05129 697 aa15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 PLEKP08567 350 aaPredicted RBP15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 HGFP14210 728 aa15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 EIF4A3P38919 411 aaKnown RBP15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 THOP1P52888 689 aa15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 UCNP55089 124 aa15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 UBE2HP62256 183 aa15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 SNRPD1P62314 119 aaKnown RBP15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 ALG11Q2TAA5 492 aa15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 ACBD5Q5T8D3 534 aaPredicted RBP15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 SMYD5Q6GMV2 418 aa15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 GDPD4Q6W3E5 623 aa15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 MACC1Q6ZN28 852 aa15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 CLEC14AQ86T13 490 aa15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 ZSWIM9Q86XI8 627 aa15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 PCDH19Q8TAB3 1148 aa15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 FAM172AQ8WUF8 416 aa15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 CENPIQ92674 756 aaPredicted RBP15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 TSACCQ96A04 125 aaPredicted RBP15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 TBC1D31Q96DN5 1066 aa15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 HMCESQ96FZ2 354 aa15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 STK33Q9BYT3 514 aa15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 DPH1Q9BZG8 443 aa15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 FOXP3Q9BZS1 431 aa15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 LHX3Q9UBR4 397 aa15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 PCDHGA8Q9Y5G5 932 aa15.65■□□□□ 0.1
CLSTN3-213ENST00000541953 MAST4O15021 2626 aa15.64■□□□□ 0.1
CLSTN3-213ENST00000541953 A0A1W2PQM1 296 aa15.64■□□□□ 0.09
CLSTN3-213ENST00000541953 J3QKU1 62 aa15.64■□□□□ 0.09
CLSTN3-213ENST00000541953 K7ENP7 123 aa15.64■□□□□ 0.09
CLSTN3-213ENST00000541953 AGRPO00253 132 aa15.64■□□□□ 0.09
CLSTN3-213ENST00000541953 KDELR3O43731 214 aa15.64■□□□□ 0.09
CLSTN3-213ENST00000541953 TM7SF2O76062 418 aa15.64■□□□□ 0.09
CLSTN3-213ENST00000541953 POP4O95707 220 aaKnown RBP15.64■□□□□ 0.09
CLSTN3-213ENST00000541953 RBMS1P29558 406 aaKnown RBP15.64■□□□□ 0.09
CLSTN3-213ENST00000541953 SDC4P31431 198 aa15.64■□□□□ 0.09
CLSTN3-213ENST00000541953 RFC1P35251 1148 aaPredicted RBP15.64■□□□□ 0.09
CLSTN3-213ENST00000541953 PTPN9P43378 593 aa15.64■□□□□ 0.09
CLSTN3-213ENST00000541953 JAM2P57087 298 aa15.64■□□□□ 0.09
CLSTN3-213ENST00000541953 CDR2Q01850 454 aa15.64■□□□□ 0.09
CLSTN3-213ENST00000541953 POLD3Q15054 466 aaPredicted RBP15.64■□□□□ 0.09
CLSTN3-213ENST00000541953 WSCD2Q2TBF2 565 aa15.64■□□□□ 0.09
CLSTN3-213ENST00000541953 FAXCQ5TGI0 409 aa15.64■□□□□ 0.09
CLSTN3-213ENST00000541953 INO80CQ6PI98 192 aaPredicted RBP15.64■□□□□ 0.09
CLSTN3-213ENST00000541953 TTC7BQ86TV6 843 aa15.64■□□□□ 0.09
CLSTN3-213ENST00000541953 CCDC74AQ96AQ1 378 aa15.64■□□□□ 0.09
CLSTN3-213ENST00000541953 TTYH3Q9C0H2 523 aa15.64■□□□□ 0.09
CLSTN3-213ENST00000541953 MAGEH1Q9H213 219 aa15.64■□□□□ 0.09
CLSTN3-213ENST00000541953 CLSTN2Q9H4D0 955 aa15.64■□□□□ 0.09
CLSTN3-213ENST00000541953 EVA1BQ9NVM1 165 aa15.64■□□□□ 0.09
CLSTN3-213ENST00000541953 HECTD1Q9ULT8 2610 aa15.64■□□□□ 0.09
CLSTN3-213ENST00000541953 PADI4Q9UM07 663 aa15.64■□□□□ 0.09
CLSTN3-213ENST00000541953 AHCTF1Q8WYP5 2266 aa15.63■□□□□ 0.09
CLSTN3-213ENST00000541953 BUB1O43683 1085 aa15.63■□□□□ 0.09
CLSTN3-213ENST00000541953 TCEA3O75764 348 aa15.63■□□□□ 0.09
CLSTN3-213ENST00000541953 ANXA6P08133 673 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms