RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 KCNK12Q9HB15 430 aa10.53□□□□□ -0.72
CHFR-219ENST00000541341 APOBEC3GQ9HC16 384 aaKnown RBP10.53□□□□□ -0.72
CHFR-219ENST00000541341 PCDH18Q9HCL0 1135 aa10.53□□□□□ -0.72
CHFR-219ENST00000541341 MARCH5Q9NX47 278 aa10.53□□□□□ -0.72
CHFR-219ENST00000541341 MIOSQ9NXC5 875 aa10.53□□□□□ -0.72
CHFR-219ENST00000541341 COPG2Q9UBF2 871 aa10.53□□□□□ -0.72
CHFR-219ENST00000541341 SEPT3Q9UH03 358 aa10.53□□□□□ -0.72
CHFR-219ENST00000541341 RAP2CQ9Y3L5 183 aa10.53□□□□□ -0.72
CHFR-219ENST00000541341 IPPQ9Y573 584 aa10.53□□□□□ -0.72
CHFR-219ENST00000541341 DMXL1Q9Y485 3027 aa10.52□□□□□ -0.72
CHFR-219ENST00000541341 CCDC195A0A1B0GUA6 201 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 SH3PXD2BA1X283 911 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 E9PBE3 544 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 MATN2O00339 956 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 HDAC3O15379 428 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 DNAJA2O60884 412 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 BCAS2O75934 225 aaPredicted RBP10.52□□□□□ -0.73
CHFR-219ENST00000541341 BMP10O95393 424 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 STAU1O95793 577 aaKnown RBP10.52□□□□□ -0.73
CHFR-219ENST00000541341 ALDH2P05091 517 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 TFAP2AP05549 437 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 APRTP07741 180 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 CD48P09326 243 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 FGF3P11487 239 aaPredicted RBP10.52□□□□□ -0.73
CHFR-219ENST00000541341 CD19P15391 556 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 NPR3P17342 541 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 RPL17P18621 184 aaKnown RBP10.52□□□□□ -0.73
CHFR-219ENST00000541341 ITGAXP20702 1163 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 TYK2P29597 1187 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 HMOX2P30519 316 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 MLH1P40692 756 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 SCNN1GP51170 649 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 GDF10P55107 478 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 USP46P62068 366 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 SLC25A3Q00325 362 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 ZBTB17Q13105 803 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 KLF10Q13118 480 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 TUBB3Q13509 450 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 TDGQ13569 410 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 APOFQ13790 326 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 UGP2Q16851 508 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 TMEM132AQ24JP5 1023 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 KCTD21Q4G0X4 260 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 PDCD4Q53EL6 469 aaKnown RBP10.52□□□□□ -0.73
CHFR-219ENST00000541341 XKR4Q5GH76 650 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 N4BP2L1Q5TBK1 243 aaPredicted RBP10.52□□□□□ -0.73
CHFR-219ENST00000541341 HEATR6Q6AI08 1181 aaKnown RBP10.52□□□□□ -0.73
CHFR-219ENST00000541341 KRT80Q6KB66 452 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 ALKAL1Q6UXT8 129 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 UNC5AQ6ZN44 842 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 LINC00299Q6ZSB3 139 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 FRA10AC1Q70Z53 315 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 SATL1Q86VE3 508 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 ZNF354CQ86Y25 554 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 XYLT1Q86Y38 959 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 HOMEZQ8IX15 550 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 BBS5Q8N3I7 341 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 ZNF513Q8N8E2 541 aaPredicted RBP10.52□□□□□ -0.73
CHFR-219ENST00000541341 PDPRQ8NCN5 879 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 ZSWIM2Q8NEG5 633 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 TSPAN14Q8NG11 270 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 POP5Q969H6 163 aaKnown RBP10.52□□□□□ -0.73
CHFR-219ENST00000541341 NMD3Q96D46 503 aaKnown RBP10.52□□□□□ -0.73
CHFR-219ENST00000541341 PGBD4Q96DM1 585 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 SIGLEC10Q96LC7 697 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 ZFP42Q96MM3 310 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 TSPAN18Q96SJ8 248 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 GAD1Q99259 594 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 TCHPQ9BT92 498 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 MRPL1Q9BYD6 325 aaKnown RBP10.52□□□□□ -0.73
CHFR-219ENST00000541341 BCO2Q9BYV7 579 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 MUC13Q9H3R2 512 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 NXF3Q9H4D5 531 aaKnown RBP10.52□□□□□ -0.73
CHFR-219ENST00000541341 PLEKHA5Q9HAU0 1116 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 USP29Q9HBJ7 922 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 TCF7L2Q9NQB0 619 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 MRPL17Q9NRX2 175 aaKnown RBP10.52□□□□□ -0.73
CHFR-219ENST00000541341 KLHL11Q9NVR0 708 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 UBAP1Q9NZ09 502 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 CLIC5Q9NZA1 410 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 KLK14Q9P0G3 267 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 TMEM9Q9P0T7 183 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 IGSF9Q9P2J2 1179 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 SUCOQ9UBS9 1254 aaKnown RBP10.52□□□□□ -0.73
CHFR-219ENST00000541341 ADAMTS6Q9UKP5 1117 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 AP4B1Q9Y6B7 739 aa10.52□□□□□ -0.73
CHFR-219ENST00000541341 SCN1AP35498 2009 aa10.51□□□□□ -0.73
CHFR-219ENST00000541341 NOTCH4Q99466 2003 aa10.51□□□□□ -0.73
CHFR-219ENST00000541341 TSC2P49815 1807 aa10.51□□□□□ -0.73
CHFR-219ENST00000541341 KANSL1LA0AUZ9 987 aa10.51□□□□□ -0.73
CHFR-219ENST00000541341 TRIM38O00635 465 aa10.51□□□□□ -0.73
CHFR-219ENST00000541341 VILLO15195 856 aa10.51□□□□□ -0.73
CHFR-219ENST00000541341 NCAM2O15394 837 aa10.51□□□□□ -0.73
CHFR-219ENST00000541341 TEX28O15482 410 aa10.51□□□□□ -0.73
CHFR-219ENST00000541341 H6PDO95479 791 aa10.51□□□□□ -0.73
CHFR-219ENST00000541341 C1QAP02745 245 aa10.51□□□□□ -0.73
CHFR-219ENST00000541341 URODP06132 367 aa10.51□□□□□ -0.73
CHFR-219ENST00000541341 HNRNPCP07910 306 aaKnown RBP eCLIP10.51□□□□□ -0.731e-7■□□□□ 10.5
CHFR-219ENST00000541341 KITP10721 976 aa10.51□□□□□ -0.73
CHFR-219ENST00000541341 FCGR1AP12314 374 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms