RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 SOX11P35716 441 aa20.48■□□□□ 0.87
TMEM260-203ENST00000539559 RAB10P61026 200 aa20.48■□□□□ 0.87
TMEM260-203ENST00000539559 RHDQ02161 417 aa20.48■□□□□ 0.87
TMEM260-203ENST00000539559 LRP8Q14114 963 aa20.48■□□□□ 0.87
TMEM260-203ENST00000539559 KYAT1Q16773 422 aa20.48■□□□□ 0.87
TMEM260-203ENST00000539559 ITPRIPL1Q6GPH6 555 aa20.48■□□□□ 0.87
TMEM260-203ENST00000539559 TAPT1Q6NXT6 567 aa20.48■□□□□ 0.87
TMEM260-203ENST00000539559 PAQR9Q6ZVX9 377 aa20.48■□□□□ 0.87
TMEM260-203ENST00000539559 GPRIN1Q7Z2K8 1008 aa20.48■□□□□ 0.87
TMEM260-203ENST00000539559 LRRC52Q8N7C0 313 aa20.48■□□□□ 0.87
TMEM260-203ENST00000539559 NT5C3BQ969T7 300 aa20.48■□□□□ 0.87
TMEM260-203ENST00000539559 ZNF419Q96HQ0 510 aaPredicted RBP20.48■□□□□ 0.87
TMEM260-203ENST00000539559 TRIM8Q9BZR9 551 aa20.48■□□□□ 0.87
TMEM260-203ENST00000539559 WDR6Q9NNW5 1121 aaKnown RBP20.48■□□□□ 0.87
TMEM260-203ENST00000539559 TIMMDC1Q9NPL8 285 aa20.48■□□□□ 0.87
TMEM260-203ENST00000539559 STAP1Q9ULZ2 295 aa20.48■□□□□ 0.87
TMEM260-203ENST00000539559 CELF2O95319 508 aaKnown RBP20.48■□□□□ 0.87
TMEM260-203ENST00000539559 NCAM1P13591 858 aa20.48■□□□□ 0.87
TMEM260-203ENST00000539559 STMN1P16949 149 aa20.48■□□□□ 0.87
TMEM260-203ENST00000539559 NPY2RP49146 381 aa20.48■□□□□ 0.87
TMEM260-203ENST00000539559 ZNF789Q5FWF6 425 aa20.48■□□□□ 0.87
TMEM260-203ENST00000539559 MARCH8Q5T0T0 291 aa20.48■□□□□ 0.87
TMEM260-203ENST00000539559 RBM20Q5T481 1227 aaKnown RBP20.48■□□□□ 0.87
TMEM260-203ENST00000539559 SPRYD7Q5W111 196 aa20.48■□□□□ 0.87
TMEM260-203ENST00000539559 CLEC6AQ6EIG7 209 aa20.48■□□□□ 0.87
TMEM260-203ENST00000539559 PELI3Q8N2H9 469 aa20.48■□□□□ 0.87
TMEM260-203ENST00000539559 RMND5BQ96G75 393 aaPredicted RBP20.48■□□□□ 0.87
TMEM260-203ENST00000539559 SLC45A3Q96JT2 553 aa20.48■□□□□ 0.87
TMEM260-203ENST00000539559 DDIT4Q9NX09 232 aa20.48■□□□□ 0.87
TMEM260-203ENST00000539559 CHCHD3Q9NX63 227 aaKnown RBP20.48■□□□□ 0.87
TMEM260-203ENST00000539559 HEATR9A2RTY3 570 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 HTRA2O43464 458 aaPredicted RBP20.47■□□□□ 0.87
TMEM260-203ENST00000539559 CLIC3O95833 236 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 C8BP07358 591 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 ARNTP27540 789 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 SCNN1AP37088 669 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 SLC1A2P43004 574 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 TXNL4AP83876 142 aaKnown RBP20.47■□□□□ 0.87
TMEM260-203ENST00000539559 CTBSQ01459 385 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 CDH17Q12864 832 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 C6orf10Q5SRN2 563 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 ZBTB49Q6ZSB9 765 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 ZNF467Q7Z7K2 595 aaPredicted RBP20.47■□□□□ 0.87
TMEM260-203ENST00000539559 TRIM74Q86UV6 250 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 TRIM73Q86UV7 250 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 FIBCD1Q8N539 461 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 CANT1Q8WVQ1 401 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 DUSP16Q9BY84 665 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 MYRFQ9Y2G1 1151 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 PLXNA1Q9UIW2 1896 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 SLCO1B7G3V0H7 640 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 PSMD12O00232 456 aaPredicted RBP20.47■□□□□ 0.87
TMEM260-203ENST00000539559 SLC22A2O15244 555 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 AKAP10O43572 662 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 CHRNA4P43681 627 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 SLC7A2P52569 658 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 YBX1P67809 324 aaKnown RBP20.47■□□□□ 0.87
TMEM260-203ENST00000539559 PLOD1Q02809 727 aaPredicted RBP20.47■□□□□ 0.87
TMEM260-203ENST00000539559 NOMO2Q5JPE7 1267 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 BORAQ6PGQ7 559 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 POTEHQ6S545 545 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 CHSY3Q70JA7 882 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 MAELQ96JY0 434 aaKnown RBP20.47■□□□□ 0.87
TMEM260-203ENST00000539559 PARK7Q99497 189 aaKnown RBP20.47■□□□□ 0.87
TMEM260-203ENST00000539559 HAUS8Q9BT25 410 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 UNC93B1Q9H1C4 597 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 DUS2Q9NX74 493 aaKnown RBP20.47■□□□□ 0.87
TMEM260-203ENST00000539559 SUCOQ9UBS9 1254 aaKnown RBP20.47■□□□□ 0.87
TMEM260-203ENST00000539559 GIMAP2Q9UG22 337 aa20.47■□□□□ 0.87
TMEM260-203ENST00000539559 TRIM24O15164 1050 aa20.46■□□□□ 0.87
TMEM260-203ENST00000539559 USP17L7P0C7H9 530 aa20.46■□□□□ 0.87
TMEM260-203ENST00000539559 GRIA3P42263 894 aa20.46■□□□□ 0.87
TMEM260-203ENST00000539559 ENTPD1P49961 510 aa20.46■□□□□ 0.87
TMEM260-203ENST00000539559 CREB5Q02930 508 aa20.46■□□□□ 0.87
TMEM260-203ENST00000539559 KIAA0319Q5VV43 1072 aa20.46■□□□□ 0.87
TMEM260-203ENST00000539559 MAMDC4Q6UXC1 1216 aa20.46■□□□□ 0.87
TMEM260-203ENST00000539559 CLEC20AQ6ZU45 233 aa20.46■□□□□ 0.87
TMEM260-203ENST00000539559 DPP9Q86TI2 863 aa20.46■□□□□ 0.87
TMEM260-203ENST00000539559 ZBTB46Q86UZ6 589 aa20.46■□□□□ 0.87
TMEM260-203ENST00000539559 TEKT5Q96M29 485 aa20.46■□□□□ 0.87
TMEM260-203ENST00000539559 OSBPL11Q9BXB4 747 aa20.46■□□□□ 0.87
TMEM260-203ENST00000539559 MRPL46Q9H2W6 279 aaKnown RBP20.46■□□□□ 0.87
TMEM260-203ENST00000539559 CDKN2AIPQ9NXV6 580 aaPredicted RBP20.46■□□□□ 0.87
TMEM260-203ENST00000539559 NCKIPSDQ9NZQ3 722 aa20.46■□□□□ 0.87
TMEM260-203ENST00000539559 SMIM28A0A1B0GU29 152 aa20.46■□□□□ 0.87
TMEM260-203ENST00000539559 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.46■□□□□ 0.87
TMEM260-203ENST00000539559 DFFAO00273 331 aa20.46■□□□□ 0.87
TMEM260-203ENST00000539559 MRASO14807 208 aa20.46■□□□□ 0.87
TMEM260-203ENST00000539559 UBDO15205 165 aa20.46■□□□□ 0.87
TMEM260-203ENST00000539559 NPR3P17342 541 aa20.46■□□□□ 0.87
TMEM260-203ENST00000539559 ADSLP30566 484 aaPredicted RBP20.46■□□□□ 0.87
TMEM260-203ENST00000539559 ADCYAP1R1P41586 468 aa20.46■□□□□ 0.87
TMEM260-203ENST00000539559 ALDH3B2P48448 385 aa20.46■□□□□ 0.87
TMEM260-203ENST00000539559 ZNF470Q6ECI4 717 aa20.46■□□□□ 0.87
TMEM260-203ENST00000539559 BNIPLQ7Z465 357 aa20.46■□□□□ 0.87
TMEM260-203ENST00000539559 CLVS1Q8IUQ0 354 aaPredicted RBP20.46■□□□□ 0.87
TMEM260-203ENST00000539559 RPL10LQ96L21 214 aaKnown RBP20.46■□□□□ 0.87
TMEM260-203ENST00000539559 C16orf70Q9BSU1 422 aa20.46■□□□□ 0.87
TMEM260-203ENST00000539559 FAM124BQ9H5Z6 455 aaPredicted RBP20.46■□□□□ 0.87
TMEM260-203ENST00000539559 RRAGCQ9HB90 399 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms