RNA–Protein interactions for RNA: ENST00000538235.2

CHFR-216, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 687 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-216ENST00000538235 FUBP1Q96AE4 644 aaKnown RBP13.23□□□□□ -0.29
CHFR-216ENST00000538235 TADA1Q96BN2 335 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 ALS2CR12Q96Q35 445 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 SEMA3CQ99985 751 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 MAK16Q9BXY0 300 aaKnown RBP13.23□□□□□ -0.29
CHFR-216ENST00000538235 CPEB1Q9BZB8 566 aaKnown RBP13.23□□□□□ -0.29
CHFR-216ENST00000538235 CARD9Q9H257 536 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 USP29Q9HBJ7 922 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 FSCN3Q9NQT6 498 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 KCND1Q9NSA2 647 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 DNPEPQ9ULA0 475 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 FZD4Q9ULV1 537 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 ARIH1Q9Y4X5 557 aaPredicted RBP13.23□□□□□ -0.29
CHFR-216ENST00000538235 PCDHGC4Q9Y5F7 938 aa13.23□□□□□ -0.29
CHFR-216ENST00000538235 RIF1Q5UIP0 2472 aaKnown RBP13.22□□□□□ -0.29
CHFR-216ENST00000538235 C1QTNF3-AMACRE9PGA6 284 aa13.22□□□□□ -0.29
CHFR-216ENST00000538235 AREL1O15033 823 aa13.22□□□□□ -0.29
CHFR-216ENST00000538235 ZNF185O15231 689 aa13.22□□□□□ -0.29
CHFR-216ENST00000538235 ZBTB24O43167 697 aaPredicted RBP13.22□□□□□ -0.29
CHFR-216ENST00000538235 ZSCAN12O43309 604 aa13.22□□□□□ -0.29
CHFR-216ENST00000538235 HTRA2O43464 458 aaPredicted RBP13.22□□□□□ -0.29
CHFR-216ENST00000538235 FZD6O60353 706 aa13.22□□□□□ -0.29
CHFR-216ENST00000538235 ZNF217O75362 1048 aa13.22□□□□□ -0.29
CHFR-216ENST00000538235 EPN2O95208 641 aa13.22□□□□□ -0.29
CHFR-216ENST00000538235 POP4O95707 220 aaKnown RBP13.22□□□□□ -0.29
CHFR-216ENST00000538235 ACADMP11310 421 aa13.22□□□□□ -0.29
CHFR-216ENST00000538235 ZFXP17010 805 aaPredicted RBP13.22□□□□□ -0.29
CHFR-216ENST00000538235 MX2P20592 715 aa13.22□□□□□ -0.29
CHFR-216ENST00000538235 CNR2P34972 360 aa13.22□□□□□ -0.29
CHFR-216ENST00000538235 RECQLP46063 649 aaPredicted RBP13.22□□□□□ -0.29
CHFR-216ENST00000538235 NR2C2P49116 596 aa13.22□□□□□ -0.29
CHFR-216ENST00000538235 EIF3EP60228 445 aaKnown RBP13.22□□□□□ -0.29
CHFR-216ENST00000538235 OLIG2Q13516 323 aa13.22□□□□□ -0.29
CHFR-216ENST00000538235 OASLQ15646 514 aaKnown RBP13.22□□□□□ -0.29
CHFR-216ENST00000538235 TTC31Q49AM3 519 aaPredicted RBP13.22□□□□□ -0.29
CHFR-216ENST00000538235 ZNF805Q5CZA5 627 aa13.22□□□□□ -0.29
CHFR-216ENST00000538235 CEP68Q76N32 757 aa13.22□□□□□ -0.29
CHFR-216ENST00000538235 SPATA22Q8NHS9 363 aa13.22□□□□□ -0.29
CHFR-216ENST00000538235 C1orf54Q8WWF1 131 aa13.22□□□□□ -0.29
CHFR-216ENST00000538235 P3H4Q92791 437 aa13.22□□□□□ -0.29
CHFR-216ENST00000538235 BIRC7Q96CA5 298 aa13.22□□□□□ -0.29
CHFR-216ENST00000538235 OXNAD1Q96HP4 312 aaPredicted RBP13.22□□□□□ -0.29
CHFR-216ENST00000538235 SPACA7Q96KW9 195 aa13.22□□□□□ -0.29
CHFR-216ENST00000538235 AGAP3Q96P47 875 aa13.22□□□□□ -0.29
CHFR-216ENST00000538235 HDAC8Q9BY41 377 aa13.22□□□□□ -0.29
CHFR-216ENST00000538235 SEPT10Q9P0V9 454 aa13.22□□□□□ -0.29
CHFR-216ENST00000538235 CA5BQ9Y2D0 317 aa13.22□□□□□ -0.29
CHFR-216ENST00000538235 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.22□□□□□ -0.29
CHFR-216ENST00000538235 FADS3Q9Y5Q0 445 aa13.22□□□□□ -0.29
CHFR-216ENST00000538235 BPTFQ12830 3046 aa13.21□□□□□ -0.29
CHFR-216ENST00000538235 FAM47DPA6NHR8 397 aa13.21□□□□□ -0.29
CHFR-216ENST00000538235 PPP1R12AO14974 1030 aaPredicted RBP13.21□□□□□ -0.29
CHFR-216ENST00000538235 RNASEH1O60930 286 aaKnown RBP13.21□□□□□ -0.29
CHFR-216ENST00000538235 MT-CYBP00156 380 aaPredicted RBP13.21□□□□□ -0.29
CHFR-216ENST00000538235 RBP3P10745 1247 aa13.21□□□□□ -0.29
CHFR-216ENST00000538235 NFKB1P19838 968 aa13.21□□□□□ -0.29
CHFR-216ENST00000538235 DHPSP49366 369 aaPredicted RBP13.21□□□□□ -0.29
CHFR-216ENST00000538235 NEK3P51956 506 aa13.21□□□□□ -0.29
CHFR-216ENST00000538235 AP1S1P61966 158 aa13.21□□□□□ -0.29
CHFR-216ENST00000538235 BNC1Q01954 994 aa13.21□□□□□ -0.29
CHFR-216ENST00000538235 ZNF33AQ06730 810 aa13.21□□□□□ -0.29
CHFR-216ENST00000538235 NSUN2Q08J23 767 aaKnown RBP eCLIP13.21□□□□□ -0.29
CHFR-216ENST00000538235 TMEM259Q4ZIN3 620 aa13.21□□□□□ -0.29
CHFR-216ENST00000538235 ODF2Q5BJF6 829 aa13.21□□□□□ -0.29
CHFR-216ENST00000538235 PEAR1Q5VY43 1037 aaPredicted RBP13.21□□□□□ -0.29
CHFR-216ENST00000538235 TIGD7Q6NT04 549 aaPredicted RBP13.21□□□□□ -0.29
CHFR-216ENST00000538235 ZC3H14Q6PJT7 736 aaKnown RBP13.21□□□□□ -0.29
CHFR-216ENST00000538235 MICALCLQ6ZW33 695 aa13.21□□□□□ -0.29
CHFR-216ENST00000538235 DSG4Q86SJ6 1040 aa13.21□□□□□ -0.29
CHFR-216ENST00000538235 LRRC49Q8IUZ0 686 aa13.21□□□□□ -0.29
CHFR-216ENST00000538235 RASGEF1CQ8N431 466 aa13.21□□□□□ -0.29
CHFR-216ENST00000538235 OR14C36Q8NHC7 312 aa13.21□□□□□ -0.29
CHFR-216ENST00000538235 GANCQ8TET4 914 aa13.21□□□□□ -0.29
CHFR-216ENST00000538235 TFB1MQ8WVM0 346 aaKnown RBP13.21□□□□□ -0.29
CHFR-216ENST00000538235 KLK6Q92876 244 aa13.21□□□□□ -0.29
CHFR-216ENST00000538235 CCDC114Q96M63 670 aa13.21□□□□□ -0.29
CHFR-216ENST00000538235 TRIB3Q96RU7 358 aa13.21□□□□□ -0.29
CHFR-216ENST00000538235 OMDQ99983 421 aa13.21□□□□□ -0.29
CHFR-216ENST00000538235 MLPHQ9BV36 600 aaPredicted RBP13.21□□□□□ -0.29
CHFR-216ENST00000538235 TDRD1Q9BXT4 1180 aaKnown RBP13.21□□□□□ -0.29
CHFR-216ENST00000538235 BTBD1Q9H0C5 482 aa13.21□□□□□ -0.29
CHFR-216ENST00000538235 SUV39H2Q9H5I1 410 aa13.21□□□□□ -0.29
CHFR-216ENST00000538235 RXFP3Q9NSD7 469 aa13.21□□□□□ -0.29
CHFR-216ENST00000538235 SCML1Q9UN30 329 aa13.21□□□□□ -0.29
CHFR-216ENST00000538235 TTLL3Q9Y4R7 772 aa13.21□□□□□ -0.29
CHFR-216ENST00000538235 KNL1Q8NG31 2342 aa13.21□□□□□ -0.3
CHFR-216ENST00000538235 BCLAF3A2AJT9 711 aaKnown RBP13.2□□□□□ -0.3
CHFR-216ENST00000538235 METTL12A8MUP2 240 aa13.2□□□□□ -0.3
CHFR-216ENST00000538235 RAD51BO15315 384 aa13.2□□□□□ -0.3
CHFR-216ENST00000538235 LATO43561 262 aa13.2□□□□□ -0.3
CHFR-216ENST00000538235 LIASO43766 372 aa13.2□□□□□ -0.3
CHFR-216ENST00000538235 LHCGRP22888 699 aa13.2□□□□□ -0.3
CHFR-216ENST00000538235 MAT2AP31153 395 aaKnown RBP13.2□□□□□ -0.3
CHFR-216ENST00000538235 MMP12P39900 470 aa13.2□□□□□ -0.3
CHFR-216ENST00000538235 CD86P42081 329 aa13.2□□□□□ -0.3
CHFR-216ENST00000538235 XRCC4Q13426 336 aa13.2□□□□□ -0.3
CHFR-216ENST00000538235 TEX44Q53QW1 395 aa13.2□□□□□ -0.3
CHFR-216ENST00000538235 PLA2G2CQ5R387 149 aa13.2□□□□□ -0.3
CHFR-216ENST00000538235 SEL1L2Q5TEA6 688 aa13.2□□□□□ -0.3
CHFR-216ENST00000538235 KIAA0895LQ68EN5 471 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms