RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 SATB1Q01826 763 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 ACVR1Q04771 509 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 NSUN2Q08J23 767 aaKnown RBP eCLIP6.69□□□□□ -1.34
USP28-206ENST00000538224 GALNT1Q10472 559 aaPredicted RBP6.69□□□□□ -1.34
USP28-206ENST00000538224 TUBB3Q13509 450 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 VEPH1Q14D04 833 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 CNGA3Q16281 694 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 PCSK7Q16549 785 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 SH2D4BQ5SQS7 431 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 ARTNQ5T4W7 220 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 CES4AQ5XG92 561 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 TPGS2Q68CL5 300 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 MRNIPQ6NTE8 343 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 ESRP1Q6NXG1 681 aaKnown RBP6.69□□□□□ -1.34
USP28-206ENST00000538224 EPGNQ6UW88 154 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 ZNF783Q6ZMS7 281 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 RINLQ6ZS11 566 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 TTC7BQ86TV6 843 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 MIB1Q86YT6 1006 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 SLC41A1Q8IVJ1 513 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 SLC22A9Q8IVM8 553 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 MFN1Q8IWA4 741 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 SCUBE1Q8IWY4 988 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP6.69□□□□□ -1.34
USP28-206ENST00000538224 PLD6Q8N2A8 252 aaKnown RBP6.69□□□□□ -1.34
USP28-206ENST00000538224 GPATCH11Q8N954 259 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 TDRD5Q8NAT2 981 aaKnown RBP6.69□□□□□ -1.34
USP28-206ENST00000538224 ATAD1Q8NBU5 361 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 DBF4BQ8NFT6 615 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 PSMG2Q969U7 264 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 ZNF778Q96MU6 729 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 FAM161BQ96MY7 647 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 ASB2Q96Q27 587 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 TRMOQ9BU70 441 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 GATA5Q9BWX5 397 aaPredicted RBP6.69□□□□□ -1.34
USP28-206ENST00000538224 GPR62Q9BZJ7 368 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 C20orf27Q9GZN8 174 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 NACA2Q9H009 215 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 DENND2DQ9H6A0 471 aaPredicted RBP6.69□□□□□ -1.34
USP28-206ENST00000538224 CAB39LQ9H9S4 337 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 EML4Q9HC35 981 aaKnown RBP6.69□□□□□ -1.34
USP28-206ENST00000538224 GPAMQ9HCL2 828 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 BATF3Q9NR55 127 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 CREBZFQ9NS37 354 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 NDFIP2Q9NV92 336 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 INTS10Q9NVR2 710 aaKnown RBP6.69□□□□□ -1.34
USP28-206ENST00000538224 ARMCX1Q9P291 453 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 XPR1Q9UBH6 696 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 UXTQ9UBK9 157 aaPredicted RBP6.69□□□□□ -1.34
USP28-206ENST00000538224 ZNF212Q9UDV6 495 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 STK39Q9UEW8 545 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 SEPT3Q9UH03 358 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 AFF4Q9UHB7 1163 aaKnown RBP6.69□□□□□ -1.34
USP28-206ENST00000538224 BCAP29Q9UHQ4 241 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 MCM8Q9UJA3 840 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 NUDT5Q9UKK9 219 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 MAFFQ9ULX9 164 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 RUVBL2Q9Y230 463 aaKnown RBP6.69□□□□□ -1.34
USP28-206ENST00000538224 VPS9D1Q9Y2B5 631 aa6.69□□□□□ -1.34
USP28-206ENST00000538224 ZNF106Q9H2Y7 1883 aaKnown RBP6.68□□□□□ -1.34
USP28-206ENST00000538224 HELZP42694 1942 aaKnown RBP6.68□□□□□ -1.34
USP28-206ENST00000538224 DENND4CQ5VZ89 1909 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 A0A1B0GVM2 712 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 TYW5A2RUC4 315 aaKnown RBP6.68□□□□□ -1.34
USP28-206ENST00000538224 TCAF2A6NFQ2 919 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 C2orf71A6NGG8 1288 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 MROH6A6NGR9 719 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 PRR5-ARHGAP8B1AHC4 643 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 J3KR12 359 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 TK2O00142 265 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 MATN2O00339 956 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 PHGDHO43175 533 aaKnown RBP6.68□□□□□ -1.34
USP28-206ENST00000538224 KIF1CO43896 1103 aaKnown RBP6.68□□□□□ -1.34
USP28-206ENST00000538224 DIAPH2O60879 1101 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 FKBP6O75344 327 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 TRPA1O75762 1119 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 RPP40O75818 363 aaKnown RBP6.68□□□□□ -1.34
USP28-206ENST00000538224 CNTN5O94779 1100 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 PSMG1O95456 288 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 CRTAMO95727 393 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 NDST3O95803 873 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 CXCL10P02778 98 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 LTA4HP09960 611 aaKnown RBP6.68□□□□□ -1.34
USP28-206ENST00000538224 ARNTP27540 789 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 RFC2P35250 354 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 GCKP35557 465 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 VHLP40337 213 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 GRIA4P48058 902 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 ALDH7A1P49419 539 aaKnown RBP6.68□□□□□ -1.34
USP28-206ENST00000538224 NUMBP49757 651 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 PGFP49763 221 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 OXCT1P55809 520 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 AP2B1P63010 937 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 ARHGAP8P85298 464 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 MPP1Q00013 466 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 IRF9Q00978 393 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 PFKPQ01813 784 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 CREMQ03060 361 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 GNA12Q03113 381 aa6.68□□□□□ -1.34
USP28-206ENST00000538224 KDSRQ06136 332 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms