RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 FAM58BPP0C7Q3 252 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 CETPP11597 493 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 CYP11B1P15538 503 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 ZNF12P17014 697 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 ADRA1DP25100 572 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 CNTFP26441 200 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 STIP1P31948 543 aaKnown RBP6.72□□□□□ -1.33
USP28-202ENST00000535607 CIITAP33076 1130 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 MLH1P40692 756 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 LIMS1P48059 325 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 STAT2P52630 851 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 COPAP53621 1224 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 EPHB3P54753 998 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 SCAND1P57086 179 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 FOLH1Q04609 750 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 PPIDQ08752 370 aaKnown RBP6.72□□□□□ -1.33
USP28-202ENST00000535607 WASHC5Q12768 1159 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 KLF1Q13351 362 aaPredicted RBP6.72□□□□□ -1.33
USP28-202ENST00000535607 PPIL2Q13356 520 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 MTMR1Q13613 665 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 TRIP10Q15642 601 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 CNGA3Q16281 694 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 UBE2SQ16763 222 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 CBWD6Q4V339 395 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 PRR16Q569H4 304 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 CBWD3Q5JTY5 395 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 CBWD5Q5RIA9 395 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 TMEM63BQ5T3F8 832 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 ESRP1Q6NXG1 681 aaKnown RBP6.72□□□□□ -1.33
USP28-202ENST00000535607 C4orf22Q6V702 233 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 PACS1Q6VY07 963 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 RBM44Q6ZP01 1051 aaKnown RBP6.72□□□□□ -1.33
USP28-202ENST00000535607 ARPINQ7Z6K5 226 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 PATL1Q86TB9 770 aaKnown RBP6.72□□□□□ -1.33
USP28-202ENST00000535607 ZBTB46Q86UZ6 589 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 DNAAF5Q86Y56 855 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 ERO1BQ86YB8 467 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 CILP2Q8IUL8 1156 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 KYQ8NBH2 561 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 CEP70Q8NHQ1 597 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 SLC26A7Q8TE54 656 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 C17orf50Q8WW18 174 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 RSAD2Q8WXG1 361 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 SHC3Q92529 594 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 ATP2A3Q93084 1043 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 C16orf92Q96LL3 132 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 ZSWIM3Q96MP5 696 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 PAFAH2Q99487 392 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 DDX50Q9BQ39 737 aaKnown RBP6.72□□□□□ -1.33
USP28-202ENST00000535607 EIF2AK1Q9BQI3 630 aaKnown RBP6.72□□□□□ -1.33
USP28-202ENST00000535607 AMNQ9BXJ7 453 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 EIF2AQ9BY44 585 aaKnown RBP6.72□□□□□ -1.33
USP28-202ENST00000535607 EBF3Q9H4W6 596 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 ZNF696Q9H7X3 374 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 NRDE2Q9H7Z3 1164 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 ZMAT4Q9H898 229 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 JMJD4Q9H9V9 463 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 PARVAQ9NVD7 372 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 FAIMQ9NVQ4 179 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 C14orf119Q9NWQ9 140 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 MKS1Q9NXB0 559 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 CLIC5Q9NZA1 410 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 EPS15L1Q9UBC2 864 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 CNOT6Q9ULM6 557 aaKnown RBP6.72□□□□□ -1.33
USP28-202ENST00000535607 PRPF19Q9UMS4 504 aaKnown RBP6.72□□□□□ -1.33
USP28-202ENST00000535607 PCDHB2Q9Y5E7 798 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 PCDHA1Q9Y5I3 950 aa6.72□□□□□ -1.33
USP28-202ENST00000535607 FRMPD2Q68DX3 1309 aaPredicted RBP6.72□□□□□ -1.33
USP28-202ENST00000535607 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP6.71□□□□□ -1.34
USP28-202ENST00000535607 WDR91A4D1P6 747 aa6.71□□□□□ -1.34
USP28-202ENST00000535607 TMEM221A6NGB7 291 aa6.71□□□□□ -1.34
USP28-202ENST00000535607 E9PBE3 544 aa6.71□□□□□ -1.34
USP28-202ENST00000535607 ZNF701M0R085 212 aaPredicted RBP6.71□□□□□ -1.34
USP28-202ENST00000535607 SGK1O00141 431 aa6.71□□□□□ -1.34
USP28-202ENST00000535607 ETV2O00321 342 aaPredicted RBP6.71□□□□□ -1.34
USP28-202ENST00000535607 CXCL11O14625 94 aa6.71□□□□□ -1.34
USP28-202ENST00000535607 TRDMT1O14717 391 aaKnown RBP6.71□□□□□ -1.34
USP28-202ENST00000535607 TP73O15350 636 aa6.71□□□□□ -1.34
USP28-202ENST00000535607 BUD23O43709 281 aaKnown RBP6.71□□□□□ -1.34
USP28-202ENST00000535607 RNASEH1O60930 286 aaKnown RBP6.71□□□□□ -1.34
USP28-202ENST00000535607 NOL3O60936 208 aaKnown RBP6.71□□□□□ -1.34
USP28-202ENST00000535607 KRT38O76015 456 aa6.71□□□□□ -1.34
USP28-202ENST00000535607 TOMM70O94826 608 aa6.71□□□□□ -1.34
USP28-202ENST00000535607 SGPL1O95470 568 aa6.71□□□□□ -1.34
USP28-202ENST00000535607 NDUFB10O96000 172 aa6.71□□□□□ -1.34
USP28-202ENST00000535607 CYP3A4P08684 503 aa6.71□□□□□ -1.34
USP28-202ENST00000535607 SNRPAP09012 282 aaKnown RBP6.71□□□□□ -1.34
USP28-202ENST00000535607 DHRS4L1P0CG22 281 aa6.71□□□□□ -1.34
USP28-202ENST00000535607 TRIM49P0CI25 452 aa6.71□□□□□ -1.34
USP28-202ENST00000535607 TRIM49CP0CI26 452 aa6.71□□□□□ -1.34
USP28-202ENST00000535607 PORP16435 677 aaPredicted RBP6.71□□□□□ -1.34
USP28-202ENST00000535607 CHRNB2P17787 502 aa6.71□□□□□ -1.34
USP28-202ENST00000535607 GLDCP23378 1020 aa6.71□□□□□ -1.34
USP28-202ENST00000535607 APEX1P27695 318 aaKnown RBP6.71□□□□□ -1.34
USP28-202ENST00000535607 MC4RP32245 332 aa6.71□□□□□ -1.34
USP28-202ENST00000535607 TTKP33981 857 aa6.71□□□□□ -1.34
USP28-202ENST00000535607 SREBF1P36956 1147 aa6.71□□□□□ -1.34
USP28-202ENST00000535607 PPARGP37231 505 aaPredicted RBP6.71□□□□□ -1.34
USP28-202ENST00000535607 FDFT1P37268 417 aa6.71□□□□□ -1.34
USP28-202ENST00000535607 SERPINB9P50453 376 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms