RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	VAMP2	P63027	116 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	ECT2L	Q008S8	904 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	TLE2	Q04725	743 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	FAM27E3	Q08E93	113 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	PKP1	Q13835	747 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	HNF4G	Q14541	408 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	NAA25	Q14CX7	972 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	GPR68	Q15743	365 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	SLC18A3	Q16572	532 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	ATG16L1	Q676U5	607 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	SPSB3	Q6PJ21	355 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	TRIM74	Q86UV6	250 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	TRIM73	Q86UV7	250 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	CCDC105	Q8IYK2	499 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	SETD9	Q8NE22	299 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	OR4N2	Q8NGD1	307 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	RFWD2	Q8NHY2	731 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	TMEM170A	Q8WVE7	144 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	WASF1	Q92558	559 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	MAEL	Q96JY0	434 aa	Known RBP	2.92	□□□□□ -1.94
CD44-238	ENST00000534296	OR1F2P	Q96R84	312 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	SLC25A33	Q9BSK2	321 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	SLC26A6	Q9BXS9	759 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	NPFFR1	Q9GZQ6	430 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	UBA5	Q9GZZ9	404 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	UNC45A	Q9H3U1	944 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	VEZT	Q9HBM0	779 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	C9orf78	Q9NZ63	289 aa	Predicted RBP	2.92	□□□□□ -1.94
CD44-238	ENST00000534296	CNOT7	Q9UIV1	285 aa	Known RBP	2.92	□□□□□ -1.94
CD44-238	ENST00000534296	AGO1	Q9UL18	857 aa	Known RBP	2.92	□□□□□ -1.94
CD44-238	ENST00000534296	PCDHGB5	Q9Y5G0	923 aa		2.92	□□□□□ -1.94
CD44-238	ENST00000534296	KAT6B	Q8WYB5	2073 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	C17orf113	A0A1B0GUU1	675 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	VWA3A	A6NCI4	1184 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	SH2D7	A6NKC9	451 aa	Predicted RBP	2.91	□□□□□ -1.94
CD44-238	ENST00000534296	TTC36	A6NLP5	189 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	C17orf100	A8MU93	164 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	EBAG9	O00559	213 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	KLK10	O43240	276 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	DHX16	O60231	1041 aa	Known RBP	2.91	□□□□□ -1.94
CD44-238	ENST00000534296	CEP104	O60308	925 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	ATP2C2	O75185	946 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	CH25H	O95992	272 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	AGR2	O95994	175 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	POLB	P06746	335 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	PTPN2	P17706	415 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	ELF1	P32519	619 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	PTPN9	P43378	593 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	ADORA2A-AS1	P86434	159 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	CAPS	Q13938	189 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	LPIN1	Q14693	890 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	NFIL3	Q16649	462 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	KIF19	Q2TAC6	998 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	SH2D4B	Q5SQS7	431 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	FAAH2	Q6GMR7	532 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	CES5A	Q6NT32	575 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	LRRC8D	Q7L1W4	858 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	RSRC2	Q7L4I2	434 aa	Known RBP	2.91	□□□□□ -1.94
CD44-238	ENST00000534296	RRM2B	Q7LG56	351 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	PRSS45	Q7RTY3	260 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	ADGRG6	Q86SQ4	1221 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	LURAP1L	Q8IV03	231 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	SFTPA2	Q8IWL1	248 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	MB21D2	Q8IYB1	491 aa	Predicted RBP	2.91	□□□□□ -1.94
CD44-238	ENST00000534296	CLIP4	Q8N3C7	705 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	CPXM2	Q8N436	756 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	ESX1	Q8N693	406 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	MCPH1	Q8NEM0	835 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	TNIP2	Q8NFZ5	429 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	GDPD5	Q8WTR4	605 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	TMED6	Q8WW62	240 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	RAB40A	Q8WXH6	277 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	TRIB2	Q92519	343 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	RILPL2	Q969X0	211 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	HVCN1	Q96D96	273 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	KIF1BP	Q96EK5	621 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	ZC3HAV1L	Q96H79	300 aa	Known RBP	2.91	□□□□□ -1.94
CD44-238	ENST00000534296	IGSF21	Q96ID5	467 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	FIZ1	Q96SL8	496 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	EIF2AK1	Q9BQI3	630 aa	Known RBP	2.91	□□□□□ -1.94
CD44-238	ENST00000534296	GPR63	Q9BZJ6	419 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	MROH8	Q9H579	483 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	EPHX3	Q9H6B9	360 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	MVB12B	Q9H7P6	319 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	ANKRD10	Q9NXR5	420 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	NLK	Q9UBE8	527 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	PGAP2	Q9UHJ9	254 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	ICAM5	Q9UMF0	924 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	TBX20	Q9UMR3	447 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	CRYL1	Q9Y2S2	319 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296	SLC45A1	Q9Y2W3	748 aa		2.91	□□□□□ -1.94
CD44-238	ENST00000534296		B9A039	149 aa		2.9	□□□□□ -1.95
CD44-238	ENST00000534296	SLC16A5	O15375	505 aa		2.9	□□□□□ -1.95
CD44-238	ENST00000534296	LDB3	O75112	727 aa		2.9	□□□□□ -1.95
CD44-238	ENST00000534296	PLA2G2A	P14555	144 aa		2.9	□□□□□ -1.95
CD44-238	ENST00000534296	SLC2A4	P14672	509 aa		2.9	□□□□□ -1.95
CD44-238	ENST00000534296	POU1F1	P28069	291 aa		2.9	□□□□□ -1.95
CD44-238	ENST00000534296	PSMC2	P35998	433 aa	Known RBP	2.9	□□□□□ -1.95
CD44-238	ENST00000534296	MXI1	P50539	228 aa		2.9	□□□□□ -1.95
CD44-238	ENST00000534296	TUBA1B	P68363	451 aa		2.9	□□□□□ -1.95

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