RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 CTNNA2P26232 953 aa20.08■□□□□ 0.81
CPSF1-209ENST00000532725 ABL2P42684 1182 aa20.08■□□□□ 0.81
CPSF1-209ENST00000532725 MMP13P45452 471 aa20.08■□□□□ 0.81
CPSF1-209ENST00000532725 CSNK1EP49674 416 aaKnown RBP20.08■□□□□ 0.81
CPSF1-209ENST00000532725 LIMK1P53667 647 aa20.08■□□□□ 0.81
CPSF1-209ENST00000532725 ADCY2Q08462 1091 aa20.08■□□□□ 0.81
CPSF1-209ENST00000532725 ZNF235Q14590 738 aa20.08■□□□□ 0.81
CPSF1-209ENST00000532725 LLGL1Q15334 1064 aa20.08■□□□□ 0.81
CPSF1-209ENST00000532725 RSPO4Q2I0M5 234 aaPredicted RBP20.08■□□□□ 0.81
CPSF1-209ENST00000532725 TFDP3Q5H9I0 405 aa20.08■□□□□ 0.81
CPSF1-209ENST00000532725 TIGD7Q6NT04 549 aaPredicted RBP20.08■□□□□ 0.81
CPSF1-209ENST00000532725 NPNTQ6UXI9 565 aa20.08■□□□□ 0.81
CPSF1-209ENST00000532725 HORMAD1Q86X24 394 aa20.08■□□□□ 0.81
CPSF1-209ENST00000532725 RNF10Q8N5U6 811 aaKnown RBP20.08■□□□□ 0.81
CPSF1-209ENST00000532725 NETO1Q8TDF5 533 aa20.08■□□□□ 0.81
CPSF1-209ENST00000532725 HDAC11Q96DB2 347 aa20.08■□□□□ 0.81
CPSF1-209ENST00000532725 FEM1CQ96JP0 617 aa20.08■□□□□ 0.81
CPSF1-209ENST00000532725 LGMNQ99538 433 aa20.08■□□□□ 0.81
CPSF1-209ENST00000532725 MGME1Q9BQP7 344 aa20.08■□□□□ 0.81
CPSF1-209ENST00000532725 ZFR2Q9UPR6 939 aaKnown RBP20.08■□□□□ 0.81
CPSF1-209ENST00000532725 HEY1Q9Y5J3 304 aa20.08■□□□□ 0.81
CPSF1-209ENST00000532725 hCG_1818297A0A087WSY0 165 aa20.07■□□□□ 0.8
CPSF1-209ENST00000532725 TSPAN11A1L157 253 aa20.07■□□□□ 0.8
CPSF1-209ENST00000532725 TRAFD1O14545 582 aaPredicted RBP20.07■□□□□ 0.8
CPSF1-209ENST00000532725 WNT9AO14904 365 aa20.07■□□□□ 0.8
CPSF1-209ENST00000532725 SPINT1O43278 529 aa20.07■□□□□ 0.8
CPSF1-209ENST00000532725 CST8O60676 142 aa20.07■□□□□ 0.8
CPSF1-209ENST00000532725 PCDH8O95206 1070 aa20.07■□□□□ 0.8
CPSF1-209ENST00000532725 MAT2AP31153 395 aaKnown RBP20.07■□□□□ 0.8
CPSF1-209ENST00000532725 NUDT1P36639 197 aa20.07■□□□□ 0.8
CPSF1-209ENST00000532725 AFF3P51826 1226 aaKnown RBP20.07■□□□□ 0.8
CPSF1-209ENST00000532725 AP1S1P61966 158 aa20.07■□□□□ 0.8
CPSF1-209ENST00000532725 RACK1P63244 317 aaKnown RBP20.07■□□□□ 0.8
CPSF1-209ENST00000532725 BNC1Q01954 994 aa20.07■□□□□ 0.8
CPSF1-209ENST00000532725 PPIDQ08752 370 aaKnown RBP20.07■□□□□ 0.8
CPSF1-209ENST00000532725 TFDP2Q14188 446 aa20.07■□□□□ 0.8
CPSF1-209ENST00000532725 ZNF284Q2VY69 593 aa20.07■□□□□ 0.8
CPSF1-209ENST00000532725 BBS5Q8N3I7 341 aa20.07■□□□□ 0.8
CPSF1-209ENST00000532725 CCNYQ8ND76 341 aa20.07■□□□□ 0.8
CPSF1-209ENST00000532725 OLFM3Q96PB7 478 aa20.07■□□□□ 0.8
CPSF1-209ENST00000532725 NUDCD1Q96RS6 583 aa20.07■□□□□ 0.8
CPSF1-209ENST00000532725 EDEM2Q9BV94 578 aa20.07■□□□□ 0.8
CPSF1-209ENST00000532725 ATP13A3Q9H7F0 1226 aa20.07■□□□□ 0.8
CPSF1-209ENST00000532725 NOD2Q9HC29 1040 aa20.07■□□□□ 0.8
CPSF1-209ENST00000532725 DOCK9Q9BZ29 2069 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 CCDC66A2RUB6 948 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 TSPAN6O43657 245 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 SYPP08247 313 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 CCNB1P14635 433 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 ITIH2P19823 946 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 MAPK8P45983 427 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 NR2C2P49116 596 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 COPS2P61201 443 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 MAXP61244 160 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 DYNLT1P63172 113 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 BCL2L1Q07817 233 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 PDK1Q15118 436 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 PPP2R5EQ16537 467 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 UGP2Q16851 508 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 TMEM259Q4ZIN3 620 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 RALGPS1Q5JS13 557 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 STPG1Q5TH74 334 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 KAZNQ674X7 775 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 ZNF662Q6ZS27 426 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 ZSWIM9Q86XI8 627 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 CCDC13Q8IYE1 715 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 SYCE1Q8N0S2 351 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 RMDN1Q96DB5 314 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 ECHDC3Q96DC8 303 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 RBM41Q96IZ5 413 aaKnown RBP20.06■□□□□ 0.8
CPSF1-209ENST00000532725 SLC6A18Q96N87 628 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 ZNF830Q96NB3 372 aaPredicted RBP20.06■□□□□ 0.8
CPSF1-209ENST00000532725 NT5MQ9NPB1 228 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 RBM22Q9NW64 420 aaKnown RBP eCLIP20.06■□□□□ 0.8
CPSF1-209ENST00000532725 DLL3Q9NYJ7 618 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 SAE1Q9UBE0 346 aaPredicted RBP20.06■□□□□ 0.8
CPSF1-209ENST00000532725 GGT7Q9UJ14 662 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 AMFRQ9UKV5 643 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 DMTF1Q9Y222 760 aa20.06■□□□□ 0.8
CPSF1-209ENST00000532725 SHROOM3Q8TF72 1996 aa20.05■□□□□ 0.8
CPSF1-209ENST00000532725 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20.05■□□□□ 0.8
CPSF1-209ENST00000532725 A0A1B0GVT2 93 aa20.05■□□□□ 0.8
CPSF1-209ENST00000532725 C4orf47A7E2U8 309 aa20.05■□□□□ 0.8
CPSF1-209ENST00000532725 WNT1P04628 370 aa20.05■□□□□ 0.8
CPSF1-209ENST00000532725 SERPINA4P29622 427 aa20.05■□□□□ 0.8
CPSF1-209ENST00000532725 GRIA4P48058 902 aa20.05■□□□□ 0.8
CPSF1-209ENST00000532725 SUOXP51687 545 aa20.05■□□□□ 0.8
CPSF1-209ENST00000532725 RWDD2BP57060 319 aa20.05■□□□□ 0.8
CPSF1-209ENST00000532725 RPS21P63220 83 aaKnown RBP20.05■□□□□ 0.8
CPSF1-209ENST00000532725 SETMARQ53H47 684 aaPredicted RBP20.05■□□□□ 0.8
CPSF1-209ENST00000532725 SEL1L3Q68CR1 1132 aa20.05■□□□□ 0.8
CPSF1-209ENST00000532725 BRAT1Q6PJG6 821 aa20.05■□□□□ 0.8
CPSF1-209ENST00000532725 PEX26Q7Z412 305 aa20.05■□□□□ 0.8
CPSF1-209ENST00000532725 ALG3Q92685 438 aa20.05■□□□□ 0.8
CPSF1-209ENST00000532725 KLK6Q92876 244 aa20.05■□□□□ 0.8
CPSF1-209ENST00000532725 SERAC1Q96JX3 654 aa20.05■□□□□ 0.8
CPSF1-209ENST00000532725 TSGA10Q9BZW7 698 aa20.05■□□□□ 0.8
CPSF1-209ENST00000532725 ZDHHC5Q9C0B5 715 aa20.05■□□□□ 0.8
CPSF1-209ENST00000532725 BRD8Q9H0E9 1235 aa20.05■□□□□ 0.8
CPSF1-209ENST00000532725 TMEM9BQ9NQ34 198 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms